| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
ncd Natranaerofaba carboxydovora
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ncd00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACONDI_03014 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ncd03021]
ACONDI_03014 (rpoC)
03400 DNA repair and recombination proteins [BR:ncd03400]
ACONDI_03014 (rpoC)
Enzymes [BR:ncd01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACONDI_03014 (rpoC)
Transcription machinery [BR:ncd03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACONDI_03014 (rpoC)
DNA repair and recombination proteins [BR:ncd03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACONDI_03014 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
3176085..3179783
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| AA seq |
1232 aa
MMDVNNFDALKIGLASPEQVRGWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPQKDWEC
HCGKYKRVRYKGIVCDRCGVEVTQSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDL
SPRILEKILYFASYIVIDPGETSLAKKQLLTETEYREYRDKYSDLFKQGKGFKAKMGAEA
IKDLLGELDLEKMAKDLRDELKTAKGQKKVRAVRRLEVVESFRKSGNNPQCMILDVIPVI
PPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVRNEKRMLQEAVDA
LIDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIHQ
CGLPKEMALELFKPFVMKRLVEEEKTHNIKSAKRMVEKVRPEVWDVLEEVIKDHPVLLNR
APTLHRLGIQAFEPILVEGRAIQIHPLVCPAYNADFDGDQMAVHVPLSAEAQAEARVLML
SAQNILNPKDGAPVAIPTQDMVLGSYYLTLEEKGAKGEGSYFLSPDEAIMAYQRDDIELH
SIVGVRVDNYTKKDFTNLSDQIPENAILLITTVGKILFNEILPKDFPFINDSKDMNVKED
DWLKKGENLKEVISKRDQREALQKNDLGELVAASYRRYGSSETAKILDEMKRLGYKYATE
AGITIGVEDIVIPGEKQSIMEEAEQSVETTEKQFKRGLITEQERYGRVIDTWSNAKDEVT
DAVMDNLEIFNPVYMMANSGARGNISQITQLAGMRGLMADPTGRIIDLPIKANFREGLTV
LEYFISTHGARKGLADTALKTADSGYLTRRLVDVSQDVIVREDDCGTKDGINVEEIKNGN
EEIENLHDRIVGRFASEDITGENNEVLVGRNELITEDKAKEIVNIGYKKVPIRSVLTCKT
RHGVCVSCYGRDMATGKIANVGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLP
RIEELFEARRPKGLAVISEVAGRVSIKEGQTKRKVIVTPSKGEEKTYNIPFGARLKVEDG
GEIEAGQELTEGSVNPHDLLKVKGVAGVQLYILQEVQKVYRLQGVDISDKHIEIIIRQML
RKIKIEEPGDTELLPGGLVDFFEFESINEEARQNGLEPAKGRPALLGITKASLATDSFLS
AASFQETTRVLTEAAIKGKTDPLIGLKENVIIGKLVPAGTGMSRYRKVKVDPQDYGGSGQ
EGADIKAEPNSIKNEDGDEIEKEEKITVDTGE |
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| NT seq |
3699 nt +upstreamnt +downstreamnt
ttgatggatgtgaataattttgatgcgcttaaaattgggcttgcttcacccgagcaggtc
aggggttggtcaagaggagaagttaaaaagcccgaaaccatcaattaccggaccctaaag
cctgagaaagaagggttgttctgtgaaaagattttcgggcctcaaaaagattgggaatgt
cattgtggtaagtataaaagagtccgttataaaggtattgtatgtgaccggtgcggagta
gaggtaactcaatctaaagttagacgtgaaagaatggggcatatagagcttgctgcacct
gtgagtcatatatggtatttcaaaggcattccaagtcggatgggacttatattagacctt
tcgccgaggattctggaaaaaatattatacttcgcctcttacatcgtaattgaccctggt
gaaacatccctggccaaaaaacagcttttaacagaaactgaatacagagagtacagagat
aagtattcagatctttttaagcagggaaaaggttttaaagcaaagatgggtgcagaggct
ataaaggacctgcttggggagctagaccttgagaagatggcgaaagacttacgtgatgaa
ttaaaaactgcaaagggccagaaaaaagttagagcagttaggcgtttggaagtggtggaa
tcatttaggaaatccgggaataatcctcaatgtatgattctagatgtaattccagtaata
ccaccggatcttcgtccaatggttcaattagatgggggaagatttgccacttctgaccta
aacgatttatacagacgagttataaataggaataaccgcttaaaacgtttgttagacctt
ggagctcctgagataatagttagaaatgaaaaaagaatgctacaagaagctgtagatgcc
ctgattgataacggcagaagaggtagagctgttacggggcctggtaatagaccgttaaaa
tcactcagtgatatgctaaaaggaaagcagggacgttttcgtcaaaacctcctaggtaaa
cgtgttgactactcaggtcgttctgttattgttgttggcccagagctaaaaattcatcag
tgcggtctgccaaaggagatggcccttgaactctttaagccatttgttatgaagcgtttg
gtagaagaggaaaaaactcataatatcaagagtgcaaaacgaatggtggaaaaagtaagg
cctgaggtatgggatgttttagaagaagttataaaagaccatcctgtacttttaaataga
gcgcccactcttcacagactaggtattcaggcttttgagccgatactggtagaaggaagg
gccattcaaatacatcctttagtttgccctgcttataatgcagactttgatggtgaccaa
atggctgttcacgtaccgttgtctgctgaagctcaggcagaggcaagggttttaatgtta
tcagcacagaatatactaaaccctaaagacggagcacctgttgccatacccactcaggat
atggtgcttggtagctattatctaaccttagaagaaaaaggtgccaaaggcgaaggtagt
tacttcttgtcgccagatgaagcgataatggcttatcaaagagatgatattgagctgcat
tcaatagtaggcgtcagggttgataattatactaaaaaagactttacaaacttatctgat
caaattccagaaaatgcaatcctattaataacaacggtagggaaaattttattcaacgag
attttgcctaaagactttcctttcattaatgattctaaagacatgaatgttaaagaagat
gactggttgaagaaaggtgaaaacttaaaagaggtaatatctaagcgtgatcaaagagaa
gcactgcaaaagaatgacttaggtgaattagttgcagctagttatcgtcgctatggaagc
tctgaaacagctaagatattagatgagatgaagcggcttggttacaaatacgcaactgaa
gctggaataaccattggagtagaagatatagttattccgggagaaaagcagtcaataatg
gaagaagctgaacaaagcgttgaaactacagaaaagcagttcaagaggggtctaataaca
gagcaagaaagatatggcagagttatagatacctggagtaatgcaaaagacgaagtgact
gatgcagtaatggataacttggagatatttaatcctgtgtatatgatggcaaattcggga
gcaagaggtaatatatcacagattacacagcttgcaggtatgagagggttaatggcagac
ccaacaggaaggataattgaccttcctatcaaggcaaactttagagagggactaacagtt
cttgaatattttatttcaacacacggtgcaagaaagggattagctgatactgctctaaag
actgccgactcagggtatctaacaagaagacttgttgatgtgagtcaggatgtaattgtg
agagaagatgattgtggtactaaagatggcattaatgttgaagagatcaagaatggaaat
gaagaaatagaaaatctacacgatagaattgtaggaagatttgcatctgaagatattact
ggagagaataatgaagtattagtagggcgaaatgagcttattacagaggataaagctaaa
gagatagtaaatatcgggtacaaaaaagtgcctattcgttcagttcttacatgtaaaaca
cgtcacggtgtatgcgtaagctgctacggccgcgacatggctactggtaaaatagctaat
gttggagaatcagttggtattatagcggcacaatcaattggagaaccagggacgcagctt
actatgcgtactttccatacaggtggggttgcaggagatgacataactcaaggtctgccg
aggatcgaggagttatttgaagctagaagaccaaaagggcttgcagttataagtgaagta
gctggccgcgtctcaataaaggaaggccaaacaaaacgaaaagttatagttacgccttca
aaaggtgaagaaaaaacatataatataccttttggtgctagactaaaagttgaagatggt
ggagaaattgaagcaggtcaagagctaactgaaggttctgttaatcctcatgacttattg
aaggtaaaaggtgtggcaggggtgcaactttatatacttcaggaagtgcagaaagtttat
agactacagggtgtggacattagtgacaaacatatagagataattatcagacagatgctt
aggaagataaaaattgaggagcctggtgatacagaacttcttcctggaggacttgttgac
ttttttgaatttgaaagtataaatgaagaagcgagacaaaatgggcttgagcctgctaaa
gggagaccagctctactaggaataacaaaagcttcccttgcgactgatagtttcttatca
gccgcatcattccaggaaactacaagagtgttaacggaagctgcaatcaaaggaaaaaca
gatcctttaataggcctgaaggaaaatgttattataggaaaactggtgccagctggaaca
ggaatgtcaagatacaggaaagtgaaggtagacccgcaagattatggtggctcaggccaa
gagggagccgatataaaagctgaacctaactctataaaaaatgaagatggtgatgaaatt
gaaaaagaagaaaaaatcactgttgacaccggtgaataa |
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