Vairimorpha ceranae: NCER_100776
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Entry
NCER_100776 CDS
T01614
Name
(GenBank) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nce
Vairimorpha ceranae
Pathway
nce03013
Nucleocytoplasmic transport
nce03015
mRNA surveillance pathway
nce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCER_100776
09122 Translation
03013 Nucleocytoplasmic transport
NCER_100776
03015 mRNA surveillance pathway
NCER_100776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nce03019
]
NCER_100776
03041 Spliceosome [BR:
nce03041
]
NCER_100776
Enzymes [BR:
nce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCER_100776
Messenger RNA biogenesis [BR:
nce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NCER_100776
Spliceosome [BR:
nce03041
]
Complex C
Other components
EJC/TREX
NCER_100776
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NCER_100776
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
GvpD_P-loop
CMS1
PhoH
Motif
Other DBs
NCBI-ProteinID:
EEQ82500
UniProt:
C4V8F7
LinkDB
All DBs
AA seq
397 aa
AA seq
DB search
MSDDELIDYREDLQTVKKSQTKLKSSAQFKDFLLRDELMESIKDAAFEHPSEVQQMAIPK
AILGQDLLCQAKSGTGKTAVFVLSTLQQLKVVDKETVIIVMVHTKEMAEQVKQEYLRFSK
KMDNVSVGAVYGGNDIEEDIKLLGTCSPSVLIGTPGRLAEIVKRRALNLKHVKFFVMDEC
DKMIGDIDMRCDTQEVFINTPRNKQTLMFTATLNKYTTDECLRFLDNPFIVRVDDESKLT
LYGLKQSYVEVEQSNKLNKLVSVLNSTTYNQAMIFTAAKLLPTKICNFLKEKGLVAGDLH
AGLKSDERKERLLSFKKYEYRIMVTTDLMSRGIDVQDVNFVINFDMPDSPETYLHRVGRA
GRFETEGQAVSFICNEEDRIKLNEIQSRFEIAISKIE
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgaattaattgattaccgtgaagatttacaaacagttaaaaagtcgcag
actaaacttaagtcatctgcgcaatttaaagattttttacttcgtgatgaacttatggaa
tcaataaaagatgctgcttttgagcaccctagtgaagttcaacaaatggccattcctaaa
gctattttaggtcaagatttattatgtcaagccaaaagtggtacaggaaagacagcggtt
tttgttctatctactttgcaacagcttaaagtagttgataaagaaactgttattattgtg
atggtacacacaaaagaaatggctgaacaggtaaaacaagaatatctgagatttagtaag
aagatggataatgtgtctgtaggtgcggtttatggtggtaatgatattgaagaagatatt
aaattacttggtacatgttcaccctctgttcttattggtacacctggtagattagcagaa
attgttaaacgtagggctcttaacttaaaacacgttaaattttttgttatggacgaatgt
gataaaatgataggtgatattgatatgagatgtgatacacaagaagtatttattaatacg
ccacgcaacaaacagacattaatgtttactgccactttgaataaatacaccactgatgaa
tgtcttagatttttagataatccttttatcgttagagtagacgatgaatctaaactaaca
ctttatggattaaaacagtcgtatgtagaagtggaacagagtaataagttaaacaaatta
gttagtgtacttaactctactacttataatcaagcaatgatttttactgctgctaaactt
cttcctacaaaaatatgcaactttttaaaagagaaagggctagtggccggtgatttacat
gcaggactgaaatctgatgaaagaaaagaaaggttgttaagttttaaaaaatacgaatat
aggattatggttactacagatttgatgtctagagggatagatgtacaagatgtaaatttt
gtaattaattttgatatgcctgattcgccggaaacatatctacacagagtgggacgtgca
ggtagatttgagacagaaggacaagctgtgtcatttatatgtaatgaagaagataggatt
aagttaaatgaaatacaaagcaggtttgagatagcgataagtaaaattgaataa
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