Vairimorpha ceranae: NCER_101250
Help
Entry
NCER_101250 CDS
T01614
Name
(GenBank) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nce
Vairimorpha ceranae
Pathway
nce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCER_101250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nce03019
]
NCER_101250
03041 Spliceosome [BR:
nce03041
]
NCER_101250
03009 Ribosome biogenesis [BR:
nce03009
]
NCER_101250
03016 Transfer RNA biogenesis [BR:
nce03016
]
NCER_101250
Enzymes [BR:
nce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCER_101250
Messenger RNA biogenesis [BR:
nce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NCER_101250
Spliceosome [BR:
nce03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NCER_101250
Complex C
U4/U6.U5 tri-SnRNP related factors
NCER_101250
Ribosome biogenesis [BR:
nce03009
]
Eukaryotic type
Pre-60S particles
Helicases
NCER_101250
Transfer RNA biogenesis [BR:
nce03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NCER_101250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
CdvA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
EEQ82104
UniProt:
C4V9K1
LinkDB
All DBs
AA seq
928 aa
AA seq
DB search
MKNNLLEALNDKTVLLDITEPIKQEIRTNTYDAFERNGTKHEAAVPIGVDYTLIPNEFQE
FTAKTYNFELDIFQKISLCALERDESVLVSAHTSSGKTVVAEYAIAMSLRDNQRVVYTSP
IKALSNQKYRELLEEFTDVGLMTGDVTINPGASCLVMTTEILRNMLYRGSEVIREIHWII
FDEIHYMRDRERGVVWEETIILLPSHVRMIFLSATIPNALEFAEWISYIQKQVVHVVYTE
KRITPLVHYFKTDKLYTIKDSEFHKNEFYKAMKTVKKGRINERNIISVIRDVSLPAVIFS
FRRKDCEYFAIRLIDDYLNDEEKEAVNTVFRNAIDSLRKEDRELPIINNILPLLLRGIGI
HHSGLLPIIKEIVEILFQEGLLKVLFATETFSIGLNMPAKSVIFTSLKKFDGVKTRHLTS
AEYIQMSGRAGRRGIDEKGIVVSLLSDVMTYAELKDLFSCSKDNLISAFRLTYNMILNLM
RVEGLDPLYLISRSFHHFQAFKKGKEKESELFEMYSLIKDLPKTKLVDLLTELENEKVVR
CKKLSVQFRPFVKKGRVVDLFIPRFGASIFIKNAIIDEIEDEHIVCLVFTKECIKKITVD
INTVYMVYDFRAKFNPKVFYKDFEKITYIEDNDLVNELEEKLKKSFPNINLQYCIICNKI
FPECYYSCSSYFLSGEEYKIDVDCSYIFDNKIKKPAKEPFYVDLDTVNYIKNEIYKDAYK
NKFKEMSKLKEIYHMDECKKMINVLRDLEYADDTTVAIKGRLACEISSGDELVLTEMIFN
GDFQKLEVDDFVPLLSCMVFEEWNEEDFVLSDENKKLYSLIEDSVRKVCRVLHKHGLEGT
PKKYLRKFSYEMMDVVKMWCRGHTFLEICNSTEVFEGSIIRTFKRLEELLKQLSNAARVI
GNNELENMFSDGIVKIKRDIVFANSLYL
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaacttactagaagctttaaatgataaaacagtactattagatattacagaa
ccaataaaacaagaaatacgaacaaacacttatgatgcatttgaaagaaatggtactaaa
catgaggcggctgttccaataggagtagactatacactcattccaaacgaatttcaagag
tttacagccaaaacttataatttcgagttagacatattccaaaaaatttcgttatgtgct
ctcgagcgcgacgaaagtgttttagttagtgcgcacacaagctcgggaaaaactgttgtg
gctgaatatgccatagcaatgtctctaagagataaccaaagagttgtttacacatcacca
atcaaagcacttagtaaccaaaaatacagagagctattagaagaatttaccgatgtcgga
ctaatgaccggtgatgtgacgattaatcctggtgcgtcgtgtttagttatgacgacagaa
atattacgcaatatgctgtatagaggtagtgaagtcataagagaaatacattggattata
tttgatgaaatacactacatgagagatcgcgaaagaggagttgtatgggaagaaacaatt
attttattaccatcacacgttcgtatgatttttttgagtgcgacgattcctaacgcactt
gaatttgcagagtggatttcgtatatacaaaagcaggtggtgcatgtcgtatatacggaa
aaacgcatcacaccacttgtacactattttaaaacggataaactttacacaattaaagat
tctgaattccataaaaatgagttttataaagctatgaaaacggtcaaaaaaggtagaata
aatgagcgaaatattatttcagtcattagagatgtttcgttgcctgcagttatattttcg
tttaggaggaaagattgcgaatattttgctataaggcttattgatgattatcttaatgat
gaagaaaaagaggcagtaaatacggtgtttaggaatgcgatagattctttacgtaaagaa
gacagagaacttcctattattaataacattttacctcttcttttacgaggtattggtata
catcattctggtttacttcccattattaaagaaattgttgaaattttatttcaggaaggg
cttttaaaagttctttttgcaacagaaacattttcaattggtcttaatatgcctgctaaa
tctgtaatttttacctcgctaaaaaagtttgatggtgttaaaacgcgccaccttaccagc
gcagagtatattcaaatgagcggacgagcgggaagaagagggattgatgaaaagggaatt
gttgttagtcttttaagtgatgttatgacatatgcagagctaaaagatttattttcgtgt
tctaaagataatttaatcagtgcttttcgtttaacttataatatgattcttaatttaatg
cgtgtggaaggtcttgatcctttgtatcttattagtagatcttttcatcattttcaagcc
tttaagaaaggtaaagaaaaagaaagcgagctatttgagatgtatagtcttataaaagat
ctacctaaaactaaattagtagatttattaactgagctggaaaatgaaaaagtggttaga
tgtaaaaaattgtctgttcaatttagaccttttgttaaaaagggacgtgtagtagatctt
tttataccacgttttggtgctagtatttttattaaaaatgctattatagatgaaatagaa
gatgaacatattgtatgtcttgtatttactaaagaatgtataaaaaagataacagtagat
attaatacggtatatatggtatatgattttagagctaaattcaatccaaaagttttttat
aaagattttgaaaaaattacttatattgaagataatgacttagttaatgaattagaagag
aaacttaaaaaatcttttcctaatattaatttacaatattgtattatttgtaataagatt
tttccggaatgctattattcgtgttctagctattttttaagtggtgaggagtataaaata
gatgtagactgttcttatatttttgataataaaataaaaaaaccggcaaaagaacctttt
tacgtagatttagatacggttaattatattaaaaacgaaatatataaagatgcctataaa
aataaattcaaagagatgtctaaacttaaagaaatttatcatatggacgaatgtaaaaaa
atgatcaatgttcttagagacttggagtatgctgatgatactactgtcgcgattaaagga
aggttggcgtgtgaaatatcatctggagatgaattggtgctaacagaaatgatttttaac
ggtgattttcagaaattggaggtagatgattttgttcctttattgtcctgtatggttttt
gaagagtggaatgaagaagattttgtactttcggatgaaaataagaagttgtattcgttg
attgaagattctgtcagaaaagtttgtcgagttcttcataaacatggattagaaggaaca
cctaaaaaataccttagaaagttctcgtatgaaatgatggatgttgttaaaatgtggtgc
cgtggacatacatttttagagatttgtaatagtacagaagtatttgaaggaagtattatt
agaacatttaaacgattagaagaattactaaagcagcttagcaatgctgcacgtgtcatt
gggaataatgaattagagaatatgtttagtgatggtattgttaaaatcaagagagatatt
gtctttgcaaattcattatatttataa
DBGET
integrated database retrieval system
