Nostoc cf. commune: ANSO36C_56660
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Entry
ANSO36C_56660 CDS
T10378
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ncf Nostoc cf. commune
Pathway
ncf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ANSO36C_56660 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncf03019
]
ANSO36C_56660 (rhlE1)
Enzymes [BR:
ncf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ANSO36C_56660 (rhlE1)
Messenger RNA biogenesis [BR:
ncf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ANSO36C_56660 (rhlE1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
UTP25_NTPase-like
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BDI19864
UniProt:
A0ABM7Z9G1
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All DBs
Position
6164084..6165424
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AA seq
446 aa
AA seq
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MSFSTLGLSNEIIRAVTERGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL
HRLSSDKSKGTSNGYPQIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVSINLQ
KQRLKGRVDILVATPGRLLDHVQQGTVNLSHIEVLVLDEADRMLDMGFINDIRRILSLLP
KKRQNLLFFATFSDKIKALAAGLLNHPTMIEVARRNVTADTIAQKIYQVDRDKKRQLLAH
LIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPARTHALAKFKNGTLQV
LVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEALSLVSVDEYPLLK
DIEILIEQRLPREVVAGFAPNSDTNAEPIPNGRQHRVKPGGDKRPARTPKPLPQTSAKRK
AAPPAINGDKPGARSSASRRSAKRDR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctactctcggcttgtccaatgaaattatccgtgccgttaccgaacgagga
tacaccgaacccacgccaattcagatgcaggcgattcctgccgttttgtcaggtagcgat
ttgctagctggggcacaaactggcactggtaagaccgctagttttaccctgccactcttg
catcggttgtcgtccgacaaaagcaaaggtacatctaatggatatccacaaatcagggcg
ctgattctcaccccaactcgtgaactagccgcacaggtagaagaaagcgtgcgcgagtac
ggcaaatacttgcagctaaactcaatggtgatgtttggtggagtcagcattaatctgcaa
aaacaacgtttgaagggtcgagtggatattctggtcgctactccagggcggctgctagac
cacgtacagcagggcacagtcaacctatcgcatattgaagttctggtgctagatgaagca
gaccggatgctggatatgggctttattaatgatatccgccgtatcctctcacttctaccc
aaaaagcggcaaaatttgctattcttcgctactttttcggacaaaattaaggcactggct
gccggactgctcaatcacccaacaatgattgaggtcgcacgccgcaacgttaccgccgac
acgatcgcacaaaaaatttatcaggtagaccgtgacaagaaacgccaattactggcccac
ctgattcggcgagataattggtatcaagtgctagtgttcactcgcactaagtacggtgct
gaccgtttggttaagcagttgggcgaagaccgcattcaagcattggcaatccacggtaat
aagagccagccagcgcgtacccatgctttggcaaagttcaagaatggcactttacaggta
ttagtagcgacagatattgctgctagaggtcttgacatcagtgaactgccccatgtagtc
aacttcgatctgcccaatgtaccagaagattatgttcatcgcattgggcgtactggtcgt
gctggggcatcaggtgaagccttatcgttggtgtccgttgatgaataccctctattgaaa
gatattgaaatactaattgagcagcgcttgccaagggaagtggtagctggttttgcaccc
aactccgataccaatgccgaaccaatcccaaatggacggcaacacagagtcaaacccgga
ggtgataagcgtccggctcggactcctaaacctttaccacagacatcggctaaacgtaaa
gcagcaccacccgccattaatggcgataaacctggcgctcgttcgtctgcatcacgccgt
tctgcgaaacgcgatcgctaa
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