Nocardiopsis changdeensis: KGD84_03610
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Entry
KGD84_03610 CDS
T08932
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KGD84_03610
09124 Replication and repair
03420 Nucleotide excision repair
KGD84_03610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncg03021
]
KGD84_03610
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_03610
Enzymes [BR:
ncg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGD84_03610
Transcription machinery [BR:
ncg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KGD84_03610
DNA repair and recombination proteins [BR:
ncg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KGD84_03610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
TRADD-like_N
IMD
Motif
Other DBs
NCBI-ProteinID:
QUX23478
LinkDB
All DBs
Position
complement(745465..747111)
Genome browser
AA seq
548 aa
AA seq
DB search
MSCLIVQSDKTLLLEVDHESADECRRTIAPFAELERAPEHVHTYRITPLALWNARAAGHD
AEQVVDALIRFSKFPVPHSLLVDIAETMDRYGRLRLEGDPVHGLVLRSSDRPVLEEVVRS
KRLRGMLGERLGDDSVAVHPSERGNLKQALLKIGWPAEDAAGYVDGEAHRIDLVQDGWEL
RDYQRAAAEGFHAGGSGVVVLPCGAGKTVVGAAAMAMTGATTLILVTNTVSVHQWKAELL
RRTTLTEDEIGEYSGTRKEIRPVTIATYQVMAAKRKGVYTHLELFDARDWGLVVYDEVHL
LPAPIFRMTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDMENQGWIAPAD
CVEVRVDLSESERLAYATAEPEDRYRFCASSEAKTAVVRELVERHADGQVLVIGSYIDQL
DELGEALGAPVIKGETRTAERERLFAAFRSGELRTLVVSKVANFSIDLPEAGVAIQVSGS
FGSRQEEAQRLGRVLRPKSDGRSARFYAVIARDTLDQDYAAHRQRFLAEQGYAYRITDAA
DILAGGEV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctgcctgatcgtccagtccgacaagaccctcctgctcgaggtcgaccacgagtcc
gcggacgagtgccgccgcaccatcgcccccttcgcggagctggagcgcgcccccgagcac
gtgcacacctaccggatcaccccgctggcgctgtggaacgcgcgcgccgcggggcacgac
gccgagcaggtcgtggacgccctgatccgcttctcgaagttccccgtgccgcactcgctg
ctggtggacatcgccgagaccatggaccgctacggacggctgcggctggagggcgacccg
gtgcacgggctcgtcctgcgctcctccgaccggccggtgctggaggaggtggtccgctcc
aagcggctcaggggcatgctgggcgagcggctcggcgacgactccgtggcggtgcacccc
agcgagcgcggcaacctcaagcaggcgctgctcaagatcggctggcccgccgaggacgcg
gccgggtacgtcgacggcgaggcgcacaggatcgacctggtccaggacggctgggagctg
cgcgactaccagcgcgccgccgccgagggcttccacgcgggcggttcgggcgtggtggtc
ctgccctgcggggcgggcaagaccgtggtgggcgccgccgcgatggcgatgaccggcgcg
accacgctcatcctggtcaccaacaccgtgtcggtgcaccagtggaaggccgagctgctg
cggcggaccacgctcaccgaggacgagatcggcgagtactcgggcacccgcaaggagatc
cggccggtcaccatcgcgacctaccaggtcatggcggccaagcggaagggcgtgtacacg
cacctggagctgttcgacgcccgcgactggggcctggtggtctacgacgaggtgcacctg
ctgcccgcgccgatcttccggatgaccgcggacctccaggcccggcggcggctggggctg
accgcgacgctggtgcgcgaggacggccgcgagggcgacgtgttctccctcatcgggccc
aagcggtacgacgccccgtggaaggacatggagaaccagggctggatcgccccggcggac
tgcgtcgaggtgcgggtggacctgtcggagtccgagcggttggcgtacgcgacggccgag
ccggaggaccgctaccggttctgcgcgtcctccgaggccaagacggcggtggtgcgggag
ctggtggagcggcacgccgacgggcaggtgctcgtgatcggctcctacatcgaccagctg
gacgaactgggcgaggcgctgggcgccccggtgatcaagggcgagacccgcaccgcggag
cgggagcggctgttcgccgcgttccggtccggggagctgcggaccctggtggtatccaag
gtcgccaacttctcgatcgacctgcccgaggccggtgtggcgatccaggtgtcggggtcg
ttcgggtcccgacaggaggaggcgcagcggctgggccgggtgctgcggcccaagtccgac
ggccggtcggcgcggttctacgcggtgatcgcgcgcgacaccctggaccaggactacgcc
gcgcaccggcagcggttcctggccgagcaggggtacgcctaccggatcaccgacgccgcc
gacatcctggccggcggcgaggtctga
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