Nocardiopsis changdeensis: KGD84_06790
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Entry
KGD84_06790 CDS
T08932
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGD84_06790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncg03019
]
KGD84_06790
03016 Transfer RNA biogenesis [BR:
ncg03016
]
KGD84_06790
Enzymes [BR:
ncg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KGD84_06790
Messenger RNA biogenesis [BR:
ncg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KGD84_06790
Transfer RNA biogenesis [BR:
ncg03016
]
Prokaryotic type
tRNA degradation factors
KGD84_06790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
QUX24023
LinkDB
All DBs
Position
1465549..1467855
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AA seq
768 aa
AA seq
DB search
MEGVYSAEAVIDNGKFGTRTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKDNL
DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIV
ETILALHPDHLYDVVAINAASMSTQIAGLPFSGPIGGVRVALIDGQWVGFPTHSELDNAT
FDMVVAGRVLEDGDVAIMMVEAESTVHTLKLVAEGAVGPNEQTVAEGLEAAKPFIKVLCR
AQQAVADQTSREEGEFPIFLDYEDDVYSAVDSAVREDLSKALTIADKQDREAELDKVKAA
AAEKLAEDFEGREKEVSAAFRSLTKNLMRERVLRDKVRIDGRGPKDIRPLSAEVGVLPRV
HGSALFERGETQILGVTTLNMLRMEQTVDTLNPEKTKRYMHNYNFPPYSTGETGRVGSPK
RREIGHGALAERALIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLSAGVPL
KEMVSGIAMGLISEGDEFVTLTDILGAEDAFGDMDFKVAGTRELITALQLDTKLDGIPAE
QLALALQQARGARLAILDVMQEAIERPAEMSPNAPRILTVKVPVDKIGEVIGPKGKMINS
IQDETGAEITIEDDGTIYIGATDGPSAEAARDTINQIANPTMPEVGDRYLGTVVKTTTFG
AFVSLLPGKDGLLHISQIRKLHGGKRIENLDDVISIGEKIQVEIREIDDRGKLSLVPVEV
VEAEAAQAAPAAPAEGDAPAEAEDKDGDNGEGAPRRRRRRSSSRSENT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtttactctgccgaagccgtcatcgacaacggcaagttcggcacccgtacc
atccgcttcgagaccggtcgcctggcccgccaggccgccggttcggcgacggtgtacctg
gacgacgagaccgtcgtgctgtccgccaccaccgcctcgaagcgacccaaggacaacctc
gacttcttcccgctgacggtggacgtcgaggagcgcatgtacgcggccggccgcatcccc
ggctcgttcttccggcgtgagggccgtccctccgaggacgccatcctcacctgccgcctg
atcgaccggccgctgcgcccgtcgttcaagaagggtctgcgcaacgagatccagatcgtc
gagacgatcctggccctgcacccggaccacctgtacgacgtcgtggccatcaacgccgcc
tcgatgtccacccagatcgccgggctgcccttctcgggtccgatcggcggcgtgcgcgtc
gccctgatcgacggccagtgggtcggcttcccgacgcactcggagctggacaacgccacc
ttcgacatggtggtcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatggtg
gaggccgagtccacggtccacaccctcaagctggtcgccgagggcgccgtcggccccaac
gagcagacggtggccgagggcctggaggccgccaagcccttcatcaaggtgctgtgccgc
gcccagcaggccgtcgcggaccagaccagccgcgaggagggcgagttcccgatcttcctc
gactacgaggacgacgtgtactccgccgtcgactccgccgtgcgcgaggacctgtccaag
gcgctgaccatcgcggacaagcaggaccgcgaggccgagctggacaaggtcaaggccgcc
gcggccgagaagctcgccgaggacttcgagggccgcgagaaggaggtctcggccgccttc
cgctcgctcaccaagaacctgatgcgcgagcgcgtcctgcgcgacaaggtccgcatcgac
ggccgcggccccaaggacatccgcccgctgtccgccgaggtcggcgtgctgccgcgcgtc
cacggctcggcgctcttcgagcgcggtgagacccagatcctgggcgtcaccaccctgaac
atgctgcgcatggagcagacggtcgacactctcaaccccgagaagaccaagcgctacatg
cacaactacaacttcccgccctactccaccggtgagaccggccgggtgggctcgcccaag
cggcgcgagatcgggcacggcgccctcgccgagcgcgccctgatcccggtcctgccctcg
cgcgaggagttcccgtacgccatccgccaggtctccgaggcgctgggctccaacggctcc
acctcgatgggctcggtctgcgcctccaccatggccctgctgtcggccggcgtgccgctc
aaggagatggtgtccggcatcgccatgggcctgatcagcgagggcgacgagttcgtcacc
ctcaccgacatcctcggcgccgaggacgcgttcggcgacatggacttcaaggtcgccggc
acccgtgagctcatcacggccctgcagctcgacaccaagctcgacggcatccccgccgag
cagctggcgctcgcgctccagcaggcccgcggcgcgcgcctggcgatcctcgacgtcatg
caggaggccatcgagcgtccggccgagatgagcccgaacgctccgcgcatcctgaccgtc
aaggtccccgtcgacaagatcggcgaggtcatcggccccaagggcaagatgatcaactcg
atccaggacgagaccggcgccgagatcacgatcgaggacgacggcaccatctacatcggt
gccaccgacggcccctcggccgaggccgcccgcgacacgatcaaccagatcgccaacccg
acgatgcccgaggtcggcgaccgctacctgggcaccgtcgtcaagaccacgacgttcggc
gcgttcgtgtcgctgctgcccggcaaggacggcctgctgcacatctcgcagatccgcaag
ctgcacggcggcaagcggatcgagaacctcgacgacgtgatcagcatcggcgagaagatc
caggtcgagatccgcgagatcgacgaccgcggcaagctgtcgctggtcccggtcgaggtc
gtcgaggcggaggccgcccaggcggctccggccgctccggccgagggcgacgccccggcc
gaggccgaggacaaggacggcgacaacggcgagggcgccccgcgccggcgccgccgccgc
tcgagcagccgctccgagaacacctga
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