Nocardiopsis changdeensis: KGD84_17800
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Entry
KGD84_17800 CDS
T08932
Name
(GenBank) SigB/SigF/SigG family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
ncg
Nocardiopsis changdeensis
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncg03021
]
KGD84_17800
Transcription machinery [BR:
ncg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KGD84_17800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_IclR
HTH_23
Sigma70_ECF
MarR
HTH_Crp_2
DUF134
HTH_3
HTH_37
HTH_16
DUF7343
HTH_31
Motif
Other DBs
NCBI-ProteinID:
QUX20376
LinkDB
All DBs
Position
3894833..3895639
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AA seq
268 aa
AA seq
DB search
MPIETGPAVDEKEVEGRSAEELLEGLQALPQDDPEAIRIQEEVLELYRPLLYRIARHYSG
RGEPYEDLRQTAHLGLVKAVHGYNPHRGKKFISYLLPTVTGEIKRHFRDHTWAVRVPRRH
QERRGRLHRVSIEFQQRHAREPGIDELAREMDLPRAEVEELLQASEAYSTLSLDLPDHKD
EEGSPTLEERIGGEDDSYELVLERESLRPAMCCLDDRERVLLRLRFFEDLTQAQIAEEIG
CSQMHVSRLLAATLDKLRERVDRDETPS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcgagaccggccccgcagtcgacgagaaggaagtcgaggggcgctcggcggaa
gaactcctggaggggctccaggccctgccccaggacgacccggaggcgatccgcatccag
gaagaggtcctggagctgtaccggcccctgctgtaccggatcgcccgccactacagcgga
cgcggcgagccctacgaggacctgcgccagaccgcccacctgggcctggtcaaggccgtc
cacggctacaacccccaccgcggcaagaagttcatctcctacctgctgcccaccgtcacc
ggcgagatcaagcgccacttccgagaccacacctgggcggtgcgcgtgccccgccgccac
caggagcggcgcggccgcctccaccgggtgagcatcgagttccagcagcgccacgcccgc
gagcccggcatcgacgagctcgcccgcgagatggacctgccccgggccgaggtcgaggag
ctgctccaggcctccgaggcctacagcaccctgtccctggacctgcccgaccacaaggac
gaggaggggagccccaccctggaggagaggatcggcggcgaggacgactcctacgaactg
gtcctggaacgcgagtccctgcgcccggccatgtgctgcctggacgaccgcgagcgcgtc
ctgctccggctgcgcttcttcgaggacctcacccaggcgcagatcgccgaggagatcggc
tgctcccagatgcacgtctcccgactcctggccgccaccctggacaagctcagggaacgg
gtggaccgggacgagacgccgagctga
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