Nocardiopsis changdeensis: KGD84_22855
Help
Entry
KGD84_22855 CDS
T08932
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03030
DNA replication
ncg03430
Mismatch repair
ncg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGD84_22855 (dnaE)
03430 Mismatch repair
KGD84_22855 (dnaE)
03440 Homologous recombination
KGD84_22855 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncg03032
]
KGD84_22855 (dnaE)
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_22855 (dnaE)
Enzymes [BR:
ncg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KGD84_22855 (dnaE)
DNA replication proteins [BR:
ncg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KGD84_22855 (dnaE)
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KGD84_22855 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF3330
Motif
Other DBs
NCBI-ProteinID:
QUX21256
LinkDB
All DBs
Position
complement(5062597..5066160)
Genome browser
AA seq
1187 aa
AA seq
DB search
MADSFVHLHVHTEYSMLDGAAKLKPLFKEAGRLGMPAVAMTDHGNMFGAYEFYQQSKGSG
VKPIIGIEAYVAPESRFHKKRVFWGRASGSDDTATEGAKDISGGGRFLHMTMLARNAAGL
RNLFKMSSLASFEGYYTKPRMDLDLMSENSEGIIVSTGCPSGGVQTRLRLGQEKEAIEYA
AKLQDIFGRENVFLELMDHGVPIEKEVRDGLLKVGRELKIPPLVTNDSHYVYESQADAHD
ALLAVGVGKNLDDPTRFRFNGSGYYLKTADEMRGLLTFDEWQEGCRNTLLIAERVDPDAY
DEVFAHRDLMPVFPVPEGETQSSWLAKEVERLLPTRYPDGAGAEVRQRVEFELGIINEMG
FPAYFLVVADICQYARKEGIALGPGRGSAAGSMIAYILGITDLDPLEHGLLFERFLNPER
VSMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAVKDSTRILGMPYSVG
DQITKAFPAAVGGKEIPLDAVFNPEHERYPETTELRNLVDNDPQVAKVMETARGIEGLTR
GTGVHAAGVILSKEPLLDVIPLHMRDADGAIITGFPYPQCEEMGLLKMDFLGLRNLTIMD
DAVKSIKEAEGIDIDLSKLPLDDKKTYQLLARGDTLGVFQLDGGAMRNLLKRMQPKKFGD
IAAVNALYRPGPMAANAHNDYADRSNGRQEITPIHPELKDALEPILAETFHLIVYQEQIM
AIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAMERGFSKEAIQTLWDVMLPF
SGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKMAVYLAECRAQGIKV
LPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIKSRTEKGKYTSFTDFLSKIELA
ACNKRVIESLIKAGAFDSLGQPRRELYRHHEVAVDGMISSKKQEAHGQFDLFGGAEEGGD
STPIGLNIQWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVLARSRDTSIAQIVAGEM
SRERNELRIAGLISKVEKRVNKAGNQWAIATVEDLDASMEVLFFPKTFPLYVDALIEDTA
VTVKGRLNDRDGTWSMFASELSILDISHITEGEPPVLLTVDEKRLTPELVDELRQVLSTH
KGDTPVRIRVDNPVRSKVFAVDRYSVRISPEFNGEMKSLLGAYAVDY
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggcagactccttcgtccacctgcatgtccacaccgagtactccatgctcgacggtgcg
gccaagctcaagcccctcttcaaggaggcggggagactgggcatgccggcggtcgcgatg
accgaccacggcaacatgttcggggcgtacgagttctaccagcagtccaagggctcgggg
gtcaagccgatcatcggcatcgaggcctacgtggcgcccgagtcgcgcttccacaagaag
cgggtgttctgggggcgggcgagcggttcggacgacaccgcgacggaaggcgccaaggac
atctccggaggcggtcgcttcctccacatgacgatgctggcccgtaacgccgccgggctg
cggaacctcttcaagatgtcctctctcgcgtccttcgaggggtactacaccaagccccgc
atggacctggacctgatgtcggagaacagcgaggggatcatcgtctccaccggctgcccc
tccggcggtgtgcagacccggctccggctgggccaggagaaggaggcgatcgagtacgcc
gccaagctccaggacatcttcggcagggagaacgtcttcctggagctgatggaccacggc
gtgcccatcgagaaggaggtccgcgacggcctcctcaaggtcggccgggagctcaagatc
ccgcccctggtcaccaacgactcccactacgtgtacgagtcccaggccgacgcccacgac
gcgctgctggcggtgggcgtgggcaagaacctggacgaccccacccggttccggttcaac
ggctcgggctactacctcaagaccgccgacgagatgcgcggcctgctcaccttcgacgag
tggcaggaggggtgcaggaacaccctgctgatcgccgagcgcgtcgaccccgacgcctac
gacgaggtcttcgcccaccgcgacctgatgccggtcttccccgtccccgagggggagacc
cagtcctcctggctggccaaggaggtcgagcggctgctgccgacccgctacccggacggc
gccggcgccgaggtccgccagcgggtggagttcgagctgggcatcatcaacgagatgggc
ttccccgcctacttcctggtggtcgccgacatctgccagtacgcccgcaaggagggcatc
gcgctgggccccggccgcggctcggcggcgggttcgatgatcgcctacatcctgggcatc
accgacctggaccccctggagcacgggctgctgttcgagcggttcctcaaccccgagcgc
gtgtccatgcccgatgtcgacctcgacttcgacgagcgccgacgcggcgagatgatcgag
tacgtcacccgcctgtacggcgccgagcgggtcgcccagatcctcaccttcggcaccatc
aaggccaaggccgccgtgaaggactccacccgcatcctgggcatgccctactcggtcggg
gaccagatcacgaaggcgttccccgcggccgtgggcggcaaggagatcccgctcgacgcc
gtgttcaaccccgagcacgagcggtaccccgagaccaccgagctgcgcaacctggtggac
aacgacccccaggtcgccaaggtcatggagaccgcgcgcggtatcgagggcctgacccgc
ggcaccggtgtgcacgcggcgggcgtcatcctgtccaaggagcccctgctcgacgtcatc
ccgctgcacatgcgcgacgccgacggggccatcatcaccggcttcccctaccctcagtgc
gaggagatggggctgctcaagatggacttcctgggcctgcgcaacctcacgatcatggac
gacgcggtcaagtccatcaaggaggccgaggggatcgacatcgacctctccaagctcccc
ctggacgacaagaagacctaccagctgctcgcgcgcggcgacaccctgggcgtgttccag
ctggacggcggcgccatgcgcaacctcctcaagcggatgcagccgaagaagttcggcgac
atcgccgccgtcaacgccctgtaccggcccggtccgatggcggccaacgcccacaacgac
tacgccgaccgatcgaacggccgccaggagatcaccccgatccacccggagctcaaggac
gccctggagccgatcctcgccgagaccttccacctgatcgtgtatcaggagcagatcatg
gccatcgcccagcagctggccgggtacacgctgggcggagccgacctgatgcgccgcgcg
atgggcaagaagaagaaggaggcccttgaggaggaggaggccaagttcttccccggcgcc
atggagcgcggcttctccaaggaggccatccagacgctctgggacgtcatgctcccgttc
tcgggctacgcgttcaacaagtcgcacgccgccggctacgccctggtctcctactggacc
gcctacctcaaggccaaccaccccgccgcgtacatggccgcgctgctgacctcggtcagc
gacgacaaggacaagatggcggtctacctcgccgagtgccgcgcccagggcatcaaggtg
ctcccgccggacgtcaacgagtccggtctgcgcttcacccccgtgggcaaggacatccgc
ttcggcatgggcgcggtccgcaacgtgggcgccaacgtcgtcaactcgatcatcaagagc
cgcacggagaagggcaagtacacgtccttcaccgatttcctgtccaagatcgagctggcc
gcctgcaacaagcgcgtcatcgagtccctgatcaaggcgggcgccttcgactccctgggc
cagccccgccgtgagctgtaccgccaccacgaggtcgcggtcgacggcatgatcagctcc
aagaagcaggaggcccacggccagttcgacctgttcggcggcgctgaggagggcggcgac
tccaccccgatcgggctgaacatccagtggggcgacgaggagtgggaccgcaagaccaag
ctcgccttcgagcgcgagatgctgggcctgtacgtgtccagccacccgctggccggggcc
gagcgggtgctggcccgctcccgggacacctccatcgcccagatcgtcgccggggagatg
agccgcgagcgcaacgagctgcgcatcgccgggctgatctccaaggtggagaagcgggtg
aacaaggcgggcaaccagtgggcgatcgccaccgtggaggacctggacgcctccatggag
gtgctgttcttccccaagaccttcccgctgtacgtggacgccctcatcgaggacaccgcg
gtgacggtcaagggccgcctcaacgaccgggacggcacctggtcgatgttcgcctcggag
ctgtccatcctggacatctcgcacatcaccgagggcgagccgccggtgctgctgacggtg
gacgagaagcggctgacccctgagctggtcgacgagctgcgccaggtgctgagcacgcac
aagggggacaccccggtgcgcatccgggtggacaacccggtccgttccaaggtcttcgcg
gtggaccgctactcggtgcggatctccccggagttcaacggtgagatgaagagcctgctg
ggggcgtacgcggtcgactactag
DBGET
integrated database retrieval system
