Nocardiopsis changdeensis: KGD84_23600
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Entry
KGD84_23600 CDS
T08932
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ncg
Nocardiopsis changdeensis
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KGD84_23600 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncg03021
]
KGD84_23600 (rpoD)
Transcription machinery [BR:
ncg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KGD84_23600 (rpoD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
PolyA_pol_arg_C
Motif
Other DBs
NCBI-ProteinID:
QUX26173
UniProt:
A0ABX8BZD1
LinkDB
All DBs
Position
complement(5232978..5234054)
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AA seq
358 aa
AA seq
DB search
MVRLLPDAGRGTVSRGEVASVLERLDAPPDSLDEAVALLARAGVEVSDGEETPLVPDPGR
RSGSDLVRLYLREIGRVPLLSAEEEVELAKAVEAGLYAQRCEPVEGVRTGDELDAIIEAG
KKAKRALIEANLRLVVSIAKRYMGRGLLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYAT
WWIRQAITRAIADQARTIRIPVHMVETINKLVRVQHQLHQQLGREPNIQEISHAAGFGGE
RVLEIQRIAREPVSLQAPIGDEEADFGDFIEDSDAVVPVEAAAFTLLQQHLTEILAGLSD
REQRILRLRFGMADGHPHTLEEVGREFGVTRERIRQIEAKTLAKLRHPSRAGTLRDFL
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
gtggtgcggctgctccccgacgcgggccggggaacggtcagccgcggcgaggtcgcgtcg
gtcctggaacgcctggacgcgccccccgactccctggacgaggcggtcgccctgctggcc
cgggccggggtggaggtgtccgacggcgaggagacgcccctcgtccccgacccgggacgg
cgctcggggtcggatctggtacggctctacctgcgcgagatcggccgggtcccgctgctc
tccgccgaggaggaggtggagctggccaaggcggtcgaggccggcctgtacgcgcaacgg
tgcgaaccggtcgaaggagtgcgcacgggggacgaactcgacgcgatcatagaagcgggc
aaaaaggccaagcgagcactcatagaggcaaatctccggctggtggtgtcgatcgccaaa
cgttatatggggcggggtctgcttttcctcgacctcatccaggagggcaacctcggactg
attcgcgcggtggagaagttcgattacaccaaaggcttcaaattctccacctacgccacc
tggtggattcgccaggcgatcacccgcgcgatcgccgaccaggcgcgcacgatccgtatt
ccggtgcacatggtcgagaccatcaacaaactcgtccgggtgcagcaccagctgcaccag
cagttgggccgcgagcccaatatccaggagatctcccacgccgccgggttcggcggcgag
agggtcctggagatccagcggatcgcccgcgaacccgtctccctccaggcgccgatcggc
gacgaggaggccgacttcggcgacttcatcgaggactccgacgccgtcgtcccggtggag
gccgccgccttcacgctgctccagcagcacctgaccgagatcctggccgggctgtccgac
cgcgaacagcgcatcctgcgcctgcgcttcggcatggccgacggccacccgcacacgctg
gaggaggtcggccgcgagttcggggtgacccgcgagcggatccgccagatcgaggccaag
accctggccaagctccgccacccctcccgggccggcaccctgcgggacttcctgtag
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