Nocardiopsis changdeensis: KGD84_25260
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Entry
KGD84_25260 CDS
T08932
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03030
DNA replication
ncg03430
Mismatch repair
ncg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGD84_25260
03430 Mismatch repair
KGD84_25260
03440 Homologous recombination
KGD84_25260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncg03032
]
KGD84_25260
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_25260
Enzymes [BR:
ncg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KGD84_25260
DNA replication proteins [BR:
ncg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KGD84_25260
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KGD84_25260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QUX21670
UniProt:
A0ABX8BIW3
LinkDB
All DBs
Position
complement(5658448..5659359)
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AA seq
303 aa
AA seq
DB search
MGTLRMGTLTRRRGGIRAADLEYAVLDTETTGLDPRTGARIVEIAVVRVRGDGTLLREST
TLVDPRADVAGREFHGIGDGDVIGAPSVDEVVPELVRLLSGAVVVGHNLDFEQRFLASEL
VPVGLPEGLPGLCTLRALRAQVRLERYSLPKASHALSGVWPTGQHTALGDARACARLLVE
MIANAPGELRYHGAEPEPVAVPLRRRVPVPSGAPAEAVRWKPRTSTPPDLFVPRPWPGAR
WRPLELDPFLCGGAFGPSDRAIAEMAAHRDARARRRLAAAAAVAGGLAAGGLLAGLGRRL
RRR
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgctgcggatggggacgctgacccggcgcaggggcggcatccgggcggcggac
ctggagtacgcggtgctcgacaccgagaccaccggcctggacccgcgcacgggcgcccgc
atcgtcgagatcgccgtggtgcgggtacgcggcgacggcaccctgctgcgggagtccacc
accctggtggacccgcgcgcggacgtggccggccgtgagttccacggcatcggcgacggc
gacgtcatcggcgccccgtccgtcgacgaggtggtgccggaactggtccggctgctctcg
ggcgcggtggtggtgggccacaacctcgacttcgagcagcgcttcctggcctcggagctg
gtccccgtcggcctgcccgaggggctgccggggctgtgcacgctgcgggccctgcgcgcg
caggtcaggctggagcgctactcgctgcccaaggcctcgcacgcgctcagcggcgtgtgg
ccgaccgggcagcacaccgccctgggcgacgcccgcgcctgcgcccgcctgctggtggag
atgatcgccaacgccccgggtgagctgcgctaccacggtgccgagcccgagccggtcgcg
gtcccgctgcgccgcagggtcccggtgccctcgggcgcgcccgcggaggccgtgcgctgg
aagccgcgcacctccaccccgccggacctgttcgtcccgcgcccgtggccgggcgcgcgc
tggcgccccctggagctggaccccttcctgtgcggcggggcgttcggcccctcggaccgg
gcgatcgcggagatggcggcgcaccgggacgcgcgggcgcgccgccgcctcgcggcggcc
gccgcggtggccggcggcctggcggccggcggactgctggccggcctgggccgccgcctg
cgccgccgctag
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