Nocardiopsis changdeensis: KGD84_27670
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Entry
KGD84_27670 CDS
T08932
Name
(GenBank) HAMP domain-containing protein
Organism
ncg
Nocardiopsis changdeensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
HATPase_c
Response_reg
HisKA
GAF_2
GAF
Laminin_II
NET2A_C
OKR_DC_1_N
RNase_Y_N
RdRP_3
Motif
Other DBs
NCBI-ProteinID:
QUX22092
LinkDB
All DBs
Position
complement(6216114..6220499)
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AA seq
1461 aa
AA seq
DB search
MPEAVGAVADDQLDEILRALYRMRDGDFSVRLRKRGSGTIREIASVFNEVVDHSEQLSSE
LKRVGGVVRNEGRLNERINVNPSRGAWAESATALNTLLDEVAEPVTDVARVLDAVAAGQL
TMRASTQGRRGDLKGDLLRLATTVNRMADQMSGFTQEVTRVAREVGTEGKLGGSARVEGV
SGSWREVTEAVNQMASRLTVQVRDISEVTTAVARGDLSKKITIDVQGEMLELKDTVNTMV
DQLSTFADEVTRVAREVGTEGKLGGRANVRGVQGIWKDLTDNVNSMADNLTNQVRDISQV
TTSVARGDLTQKVQVDVQGEMLALKNTVNTMVDQLDSFADEVTRVAREVGSEGKLGGRAN
VKGVSGIWKDLTDNVNSMANSLTYQVRNISQVTTAVAAGDLTKKITVDAQGEMLELKDTI
NKMVDQLSAFADEVTRVAREVGTEGKLAGQAHVRDVSGVWKDLTDNVNSMANNLTYQVRQ
ISMVTRAVAAGDLTKKVTVNAKGEILELKETINVMVDQLSAFADEVTRVAREVGTEGKLG
GRADVKGVSGMWKDLTENVNSMSHNLTTQVRNISEVTTAVAAGDLTKKIDVNAQGEILEV
KTTVNTMVDQLSAFATEVTRVAHEVGSQGQLGGQAKVEGVSGTWMQLTDSVNGLAGNLTT
QVRAIAEVANAVAKGDLTRNIQVDARGEMEQLKDNINLMVSNLRETTATQRDADWLKSNL
ARISGHIQGHRDLHELARLIMTEVTPLMNAQHAACYLPEDMDDQEAFLFYAGFGFEPSEA
RRRIRKGVGLAGEALDQQIELEVGNIPDGYVTIDSGLGGAQPRHLYILPIVSEERALGVL
EFASYDEFREIHKNFLRQLVALLGTTINTILANKRTEDLLEQSQQLTNQLRERSNELQRQ
QEELRNKNAELRQKATQLANQNRAIELQNQQIQRSRNALEERAHQLQVSSKYKSEFLANM
SHELRTPLNSLLILARLLADNAEQNLTPKQVEFAQTIHKAGSDLLLLIDEILDLSKVEAG
RAEVSPSEVSIDQLVDYVEATFRPVTSDQGLAFAVDVSPDIPDVLWTDEQRLQQILRNLL
SNAVKFTPQGEVRLLIEPAWALDDADLEMFVENEEIIAFTVADTGIGIAEDKLQVIFEAF
HQGDGGTSRRFGGTGLGLSISRNFARLLGGEIRVQSVPNQGSTFTLLLPVRLPEDAAERA
GEDTGLDSVPALESGRDDDFGMPPEEFDAAVAALTDPGAEALPAVPVLKAPEPAAESQAA
SGGTEPERQGEPRTDPERRAVLAGRRVLIVDDDVRNVFALTSALEAQGLEVLYADNGHEG
IAKLEANEDISLVLMDVMMPDLDGNQTTERIRQMPQFADLPIISLTAKAMQGDRERSLEA
GASDYVTKPVDLDHLLDVMRHWLTVDPADSTPGSATDPGAAAAVGAVNRHNGAEGDSSRS
SLGDDTGPTGNTGNDPTEDLE
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggcggtcggtgcagtggccgacgaccagctggacgagatcctgcgcgctctc
taccggatgcgcgacggggacttcagtgtgcgtctgcgcaaacgcggcagcgggacgatc
cgggagatcgcctcggtgttcaacgaggtcgtcgaccacagcgagcagctcagcagcgag
ctcaagcgggtcggcggggtcgtccgcaacgagggcaggctcaacgagcgcatcaacgtc
aacccctcccggggcgcgtgggcggagagcgccaccgccctcaacaccctcctggacgag
gtggccgagccggtcaccgacgtcgcccgggtcctggacgcggtcgccgccggccagctg
accatgcgcgcctccacccagggcaggcggggcgacctcaagggcgacctgctgcgcctg
gccaccaccgtgaaccggatggccgaccagatgagcggcttcacccaggaggtcacccgt
gtggcccgcgaggtgggcaccgagggcaagctcggcggcagcgcccgcgtcgagggcgtc
tccggctcctggcgcgaggtcaccgaggcggtcaaccagatggcctcccgcctcaccgtg
caggtgcgcgacatctcggaggtcaccaccgcggtcgcccgcggcgacctcagcaagaag
atcaccatcgacgtccagggcgagatgctggagctgaaggacaccgtcaacacgatggtg
gaccagctctccacgttcgccgacgaggtcacccgtgtggcccgcgaggtgggcaccgag
ggcaagctcggcggccgggccaacgtgcgcggcgtccagggcatctggaaggacctgacc
gacaacgtcaactccatggcggacaacctcaccaaccaggtgcgggacatctcccaggtg
acgacgtcggtggcccgcggcgacctcacccagaaggtccaggtggacgtccagggcgag
atgctcgccctcaagaacaccgtgaacaccatggtcgaccagctcgactccttcgccgac
gaggtcacccgcgtggcccgcgaggtcggcagcgagggcaagctgggcggccgcgcgaac
gtcaagggcgtgtcgggcatctggaaggacctgaccgacaacgtcaactccatggccaac
agcctcacctaccaggtgcgcaacatctcgcaggtgacgacggcggtggcggccggcgac
ctcaccaagaagatcaccgtggacgcccagggcgagatgctggagctgaaggacaccatc
aacaagatggtggaccagctgtccgctttcgccgacgaggtgacccgtgtggcccgcgag
gtcggcaccgagggcaagctggccggccaggcgcacgtgcgcgacgtgtccggggtctgg
aaggacctgaccgacaacgtcaactccatggccaacaacctcacctaccaggtgcggcag
atctccatggtcacccgcgccgtcgcggccggcgacctcaccaagaaggtcacggtcaac
gccaagggcgagatcctggagctcaaggagaccatcaacgtgatggtcgaccagctgtcg
gcgttcgccgacgaggtcacgcgcgtggcccgcgaggtcggcaccgagggcaagctcggc
ggccgcgccgacgtcaagggcgtctcgggcatgtggaaggacctcaccgagaacgtcaac
tcgatgtcgcacaacctcaccacgcaggtgcgcaacatctccgaggtcaccaccgcggtc
gcggccggcgacctcacgaagaagatcgacgtcaacgcccagggcgagatcctggaggtg
aagacgacggtcaacacgatggtggaccagctgtcggcgttcgccaccgaggtcacccgc
gtggcccacgaggtgggcagccagggccagctgggcggccaggccaaggtcgagggcgtc
tcgggcacgtggatgcagctcaccgacagcgtcaacgggctggccggcaacctcaccacg
caggtgcgcgccatcgccgaggtcgccaacgccgtcgccaagggcgacctgacccgcaac
atccaggtcgacgcccgcggcgagatggagcagctcaaggacaacatcaacctgatggtg
tccaacctgcgcgagaccaccgccacccagcgcgacgccgactggctcaagtccaacctg
gcccgcatctccggccacatccagggacaccgcgacctgcacgagctggcccgcctcatc
atgaccgaggtgacgccgctgatgaacgcccagcacgccgcctgctacctgcccgaggac
atggacgaccaggaggcgttcctgttctacgccgggttcgggttcgagccctccgaggcg
cgccgccgcatccgcaagggcgtcggcctggcgggggaggccctggaccagcagatcgag
ctcgaggtcggcaacatccccgacggctacgtcaccatcgactccggcctgggcggcgcg
cagccgcgccacctgtacatcctgccgatcgtgtcggaggagcgggcgctgggcgtcctg
gagttcgcctcctacgacgagttccgcgagatccacaagaacttcctgcgccagctggtc
gccctgctgggcaccacgatcaacacgatcctggccaacaagcgcaccgaggacctgctg
gagcagtcccagcagctcaccaaccagctgcgcgagcgctccaacgagctgcagcgccag
caggaggagctgcgcaacaagaacgccgagctgcgccagaaggccacccagctggccaac
cagaaccgggccatcgagctccagaaccagcagatccagcgctcccgcaacgccctggag
gagcgcgcccaccagctccaggtctcctccaagtacaagtcggagttcctggcgaacatg
tcgcacgagctgcgcacgccgctcaacagcctgctgatcctggcccggttgctggccgac
aacgccgagcagaacctcacccccaagcaggtggagttcgcccagaccatccacaaggcg
ggcagcgacctgctgctgctcatcgacgagatcctcgacctgtccaaggtcgaggcgggc
cgggccgaggtctcgcccagcgaggtctccatcgaccagctcgtcgactacgtggaggcg
acgttccggccggtcaccagcgaccaggggctggcgttcgcggtggacgtctccccggac
atccccgacgtcctgtggaccgacgagcagcggctccagcagatcctgcgcaacctgctg
tcgaacgcggtcaagttcaccccgcagggcgaggtgcggctgctcatcgagcccgcgtgg
gcgctggacgacgccgacctggagatgttcgtcgagaacgaggagatcatcgcgttcacc
gtcgccgacaccggcatcgggatcgccgaggacaagctccaggtgatcttcgaggcgttc
caccagggagacggcggcacctcccgccggttcggcggcaccgggctgggcctgtccatc
agccgcaacttcgcccgcctgctcggcggcgagatccgggtgcagagcgtccccaaccag
ggctcgaccttcaccctgctgctgccggtgcggctgcccgaggacgccgccgagcgtgcc
ggggaggacaccgggctggactcggtgcccgccctggagtccggccgcgacgacgacttc
gggatgcccccggaggagttcgacgcggcggtggcggcgctgaccgacccgggcgccgag
gcgctgcccgccgtgcccgtgctcaaggcgcccgaacccgcagcggagtcgcaggcggcc
tccggcgggaccgagccggagcggcagggcgagccccgcaccgaccccgagcgccgcgcc
gtgctggccggccgccgggtcctcatcgtcgacgacgacgtgcgcaacgtgttcgcgctg
accagcgccctggaggcccagggcctggaggtgctgtacgccgacaacggccacgagggc
atcgccaagctggaggccaacgaggacatctccctcgtcctcatggacgtgatgatgccc
gacctggacggcaaccagaccaccgagcgcatccggcagatgccccagttcgcggacctg
ccgatcatctcgctgacggccaaggccatgcagggcgaccgcgagcgcagcctggaggcg
ggtgcctccgactacgtcaccaagcccgtggacctggaccacctgctggacgtcatgcgg
cactggctgaccgtcgacccggcggacagcacgcccggatccgccaccgaccccggggcc
gcggcggcggtgggcgccgtgaaccggcacaatggcgcggaaggagacagcagccgcagc
agtctcggggatgacaccggccccacggggaacaccggcaacgacccgaccgaagacctg
gagtga
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