Nocardiopsis changdeensis: KGD84_28575
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Entry
KGD84_28575 CDS
T08932
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg00040
Pentose and glucuronate interconversions
ncg01100
Metabolic pathways
ncg02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
KGD84_28575
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KGD84_28575
Enzymes [BR:
ncg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
KGD84_28575
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
QUX22257
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Position
complement(6421092..6422384)
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AA seq
430 aa
AA seq
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MRRRLTPALALALAAALTAPVPAAADDDLGRRVLPEGDGWASAGDGTTGGAAAADENVFR
VSTAAGFREAVAGDEPKIVYVEGLIDANTAPDGSPLDCEDYAVGGYTLEAYLAAYDPRVW
GWEDPSGPLEEAREASQNAQAANVRYRVGSNTTIVGAGDGAELTGMSLLVHDVENVILRN
LTFSDAHDCFPGWDPGDGESGNWNSEYDQIEVSGSTNVWIDHNTFDDGDRPGAGQPEYFG
RRYEVHDGLLDIVRASDLVTVSWNHFDGRDKALLLGNSDGRTTDRGRLRVTWHHNHFDGL
GQRAPRVRYGQVHVYNNLYTVSGDLYQYSLGAGFESQLYVENNLFDLRDGHTAGALLYNW
GGTDVGGTGNGVMTDGRGRITRVDLVAEHNAAHPEALLGTGSAWTPRLDTGVQPVHALRG
LERKTGAGLL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagacggctcacccccgccctggccctcgccctggccgcggcgctgaccgcgccc
gtgccggccgccgccgacgacgacctcgggaggagggtgctgcccgagggcgacggctgg
gcctctgcgggcgacggcaccacgggcggcgcggccgccgcggacgagaacgtgttccgc
gtgtccaccgcggccgggttccgggaggccgtcgccggggacgagcccaagatcgtctac
gtcgaaggcctcatcgacgccaacaccgcccccgacggctcccccctggactgcgaggac
tacgccgtcggcggctacacgctggaggcgtacctggcggcctacgacccgcgggtctgg
gggtgggaggacccctccggacccctggaggaggcccgcgaggcatcgcagaacgcccag
gccgcgaacgtccgctaccgggtcggctccaacaccacgatcgtcggggccggagacggc
gccgagctcaccggcatgagcctgctggtccacgacgtggagaacgtcatcctgcgcaac
ctgaccttctccgacgcccacgactgcttccccggctgggaccccggcgacggggagagc
ggcaactggaactccgagtacgaccagatcgaggtgtccggctccacgaacgtgtggatc
gaccacaacaccttcgacgacggcgaccgccccggtgccggacagcccgagtacttcggc
cgcaggtacgaggtgcacgacgggctgctggacatcgtgcgggcctcggacctggtgacg
gtgtcgtggaaccacttcgacggccgggacaaggccctgctgctgggcaacagcgacggc
cgcaccaccgaccgcggccgcctgcgcgtgacgtggcaccacaaccacttcgacgggctc
ggccagcgcgccccgcgggtgcggtacggccaggtccacgtctacaacaacctctacacg
gtgagcggcgacctgtaccagtacagcctgggagcgggattcgagtcgcagctgtacgtg
gagaacaacctgttcgacctgcgtgacgggcacaccgccggcgccctgctgtacaactgg
ggcggcacggacgtgggcggcacgggcaacggcgtcatgacggacggccgggggaggatc
acccgcgtcgacctcgtcgccgagcacaacgcggcccacccggaggccctgctgggcacc
gggtccgcctggacgccgcggctcgacaccggggtccagcccgtgcacgccctgcgcggc
ctggagcggaagacgggcgcgggcctgctctga
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