Nocardiopsis changdeensis: KGD84_28870
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Entry
KGD84_28870 CDS
T08932
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ncg
Nocardiopsis changdeensis
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncg03032
]
KGD84_28870 (topA)
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_28870 (topA)
Enzymes [BR:
ncg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KGD84_28870 (topA)
DNA replication proteins [BR:
ncg03032
]
Prokaryotic type
DNA Topoisomerases
KGD84_28870 (topA)
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KGD84_28870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
TarS_C2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QUX22304
LinkDB
All DBs
Position
complement(6483527..6486340)
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AA seq
937 aa
AA seq
DB search
MPPTKGSAGKNGSQDSGRQGSGTALVIVESPAKAKTIAGYLGRGYVVESSIGHIRDMPTK
AAEIPAKYKGEPWARLGVNVDGDFEPLYVVNADKKSHVRKLKELMADADELLLATDEDRE
GEAIAWHLLEELKPRIPVRRMVFNEITKEAIQRAADNTRDLNTRLVTAQETRRILDRLYG
YEVSPVLWKKVMPKLSAGRVQSVATRLVVERERERMAFTPAEYWDIKALFDASGAGIPAG
DPTDFPATLVAVDGTRIAVGRDFTAQGTVRPDRAVRQLDEAAARGLAERLSASAFGVSSV
ERKPYRRSPYAPFRTTTLQQEASRKLGLSAKQTMQVAQRLYENGYITYMRTDSTTLSDSA
VRAARSQVQRLYGADYLPERPRVYAKKVKNAQEAHEAIRPAGDEFRTPSQTGLSGPELRL
YELIWKRTVASQMKDAVGESVTVKVQGTSSAGEVAEFNATGKIITFHGFLKAYVEGADDP
AADLDDRERRLPAVAEGAPLTARDLTAEGHSTRPPARYTEATLVKELEEREIGRPSTYAS
IIGTILDRGYVFKKGTALVPSFLAFAVVQLLERHFGNLVDYEFTARLEDVLDSIARGEAE
SLPWLRRFYFGGDTPEGDRETGLKELVGDRLADIDPKEISSLTVPGTEDIVLRVGRYGPY
LDRGGVRVNVPEDLAPDELTPEKAEELFAQPSGDRELGTDPETGHVVVAKSGRFGPYVTE
VIEEPEENGGKKAKAVKPRTSSLLKSMTLDTVTLADAIRLLSLPRVVGVIDGDEVTAQNG
RYGPYLKKGTDSRSLASEEQMFTVTLDEAKELFAQPKQRGRRAAAPPLRELGKDPVSGAV
MLVKDGRFGPYVTDGEVNASLRKGDEVESITDERAAELLAERRAKAPAKKPAAKKAPAKK
TTAKKTTTAAKKTTAAKKAPAKKTGTPRTAAKASDEA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
gtgccacccaccaagggcagcgccggcaagaacggctcgcaggacagcggacgacagggc
tcggggaccgccctcgtcatcgtcgagtcgcccgccaaggccaagaccatcgcgggctac
ctgggccgcggttacgtcgtggagtccagcatcgggcacatccgcgacatgcccaccaag
gccgcggagatccccgccaagtacaagggggagccctgggcccggctgggcgtcaacgtc
gacggcgacttcgagcccctctacgtcgtcaacgccgacaagaagtcccacgtgcgcaag
ctcaaggagctcatggccgacgccgacgagctcctgctcgccaccgatgaggaccgcgag
ggcgaggccatcgcctggcacctgctggaggagctcaagcccaggatcccggtgcgccgc
atggtgttcaacgagatcaccaaggaggccatccagcgcgccgccgacaacacgcgcgac
ctcaacacccggctggtgaccgcccaggagacgcgccgcatcctggaccggctctacggc
tacgaggtctcccccgtgctgtggaagaaggtcatgcccaagctctccgcgggccgggtg
cagtccgtggccacccgcctggtggtcgagcgcgagcgcgagcggatggcgttcaccccc
gccgagtactgggacatcaaggccctcttcgacgcctccggcgcgggcattcccgcgggc
gaccccaccgacttcccggccacgctggtcgccgtggacggcacccgcatcgcggtgggc
cgcgacttcaccgcccagggcaccgtgcgcccggaccgcgccgtccgccagctcgacgag
gcggccgcgcgcggcctggccgagcggctgtccgccagcgccttcggcgtgtcctcggtg
gagcgcaagccctaccgccgctcgccgtacgcgccgttccgcaccaccaccctccagcag
gaggcgtcgcgcaagctggggctgtcggccaagcagaccatgcaggtcgcccagcggctc
tacgagaacggctacatcacctacatgcgcaccgacagcaccacgctgtcggacagcgcg
gtgcgcgccgcccgctcccaggtgcagcgcctgtacggcgccgactacctgcccgagcgc
ccccgcgtctacgccaagaaggtcaagaacgcccaggaggcgcacgaggccatccgcccg
gccggcgacgagttccgcaccccgagccagaccgggctcagcggccccgagctccgcctc
tacgagctgatctggaagcgcaccgtcgcctcccagatgaaggacgccgtcggcgagtcc
gtcaccgtcaaggtgcagggcacctcctcggccggcgaggtcgccgagttcaacgccacc
ggcaagatcatcaccttccacggcttcctcaaggcctacgtggagggcgccgacgacccg
gccgccgacctcgacgaccgcgagcggcggctgcccgccgtggccgagggcgccccgctc
accgcgcgcgacctgaccgccgaggggcacagcacccgcccgccggcccgctacaccgag
gcgaccctggtcaaggagctggaggagcgggagatcggccgcccctccacctacgcctcg
atcatcggcaccatcctggaccgcggctacgtgttcaagaagggcaccgccctggtgccg
tccttcctggcgttcgccgtggtgcagctgctggagcggcacttcggcaacctggtggac
tacgagttcacggcccgcctggaggacgtgctcgactccatcgcccgcggcgaggccgag
agcctgccgtggctgcgccggttctacttcggcggcgacacccccgaaggggaccgggag
accggcctgaaggaactggtcggcgaccgcctcgccgacatcgaccccaaggagatcagc
tccctgacggtgccgggcaccgaggacatcgtgctccgggtcggccgctacggcccctac
ctggaccgcgggggagtccgggtcaacgtgcccgaggacctggcccccgacgagctgacc
ccggagaaggccgaggagctgttcgcccagcccagcggcgaccgcgagctgggcaccgac
cccgagaccgggcacgtcgtcgtggccaagtccgggcgcttcggcccctacgtcaccgag
gtcatcgaggagcccgaggagaacgggggcaagaaggccaaggccgtcaagccgcgcacc
tcctcgctgctcaagtcgatgaccctggacaccgtcaccctcgccgacgcgatcaggctg
ctctcgctgccgcgcgtggtcggcgtgatcgacggcgacgaggtcaccgcccagaacggc
cgctacggcccctacctcaagaagggcaccgacagccgctcgctcgcctccgaggagcag
atgttcacggtcaccctcgacgaggcgaaggagctgttcgcccagcccaagcagcgcggc
cgccgggccgccgccccgccgctgcgcgagctgggcaaggacccggtgtcgggcgccgtc
atgctcgtcaaggacggccggttcggcccctacgtcaccgacggggaggtcaacgcctcg
ctgcgcaagggcgacgaggtggagtccatcaccgacgagcgcgccgccgagctgctggcc
gagcgccgggccaaggcgcccgccaagaagcccgcggccaagaaggcgcccgcgaagaag
acgaccgccaagaagaccaccacggcggcgaagaagaccaccgccgccaagaaggcgccg
gccaagaagacgggcacgccccgtaccgcggccaaggcctccgacgaggcctga
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