Nocardiopsis changdeensis: KGD84_29665
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Entry
KGD84_29665 CDS
T08932
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ncg
Nocardiopsis changdeensis
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncg03032
]
KGD84_29665
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_29665
Enzymes [BR:
ncg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KGD84_29665
DNA replication proteins [BR:
ncg03032
]
Prokaryotic type
DNA Topoisomerases
KGD84_29665
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KGD84_29665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QUX22440
LinkDB
All DBs
Position
complement(6660845..6661867)
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AA seq
340 aa
AA seq
DB search
MGIERSDPGTAGITRVRRGRGFRYYGPGGEPVTDEALVRRIKGLVVPPGWHDVWICPSPD
GHIQACGTDDAGRRQYIYHPEWRRRREEAKYDDMLGLAEALPRIRRTADRHLDLRGLVRE
RVLAAAVRLVDLGLLRAGGDEYAARNDSYGVATLLREHVHRTRGTAVFEFPAKAGRCRRF
ECSEPGVVRVVASLQRARSPGQDLFAYRVEGGWHDVADGDLNAYLREITGEDHTVKEFRT
WHATVLAAVGVAVARPADGGGVSDGLRAHVVREVAHRLGNTEAVARDSYIDPRVFRLGER
GVTVADALPDLGEGVRAGELATQGGVEEAVLRMLREHGDG
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgagcgcagcgacccgggcaccgcgggcatcacgcgtgtccggcgcgggcgc
ggcttccgctactacggccccgggggcgagccggtgaccgacgaggcactggtgcggcgg
atcaaggggctcgtcgtgccgcccggctggcacgacgtgtggatctgcccctccccggac
ggccacatccaggcgtgcggcaccgacgacgccgggcggcgccagtacatctaccacccg
gaatggcggcgcaggcgcgaggaggccaagtacgacgacatgctgggcctcgccgaagcg
ctgccccggatcaggcggacggcggaccgccacctggacctgcgcggcctggtgcgcgaa
cgcgtcctggccgcggcggtccggctggtcgacctcgggctcctgcgggccggaggggac
gagtacgccgcccgcaacgactcctacggggtggccaccctgctgcgcgagcacgtgcac
cgcacccgcggcacggccgtgttcgagttccccgccaaggcgggccggtgccggaggttc
gagtgctccgaacccggggtcgtccgcgtggtcgcctcgctccagcgcgcccgctccccg
ggccaggacctcttcgcctaccgcgtggagggcggctggcacgacgtggccgacggcgac
ctcaacgcctacctgcgcgagatcaccggggaggaccacaccgtcaaggagttccgcacc
tggcacgccacggtcctggccgccgtcggcgtcgcggtggcgcgccccgccgacggcgga
ggggtgtccgacgggctgcgggcccacgtggtccgcgaggtggcccaccgcctcggcaac
accgaggcggtggcccgcgactcctacatcgaccccagggtcttccgcctcggtgagcgc
ggcgtgacggtcgcggacgcgctgcccgacctgggggagggggtccgcgccggggagctc
gccacccaggggggagtggaggaggccgtgctgcgcatgctgcgcgagcacggggacggg
tga
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