Neoasaia chiangmaiensis: A0U93_03090
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Entry
A0U93_03090 CDS
T04705
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nch
Neoasaia chiangmaiensis
Pathway
nch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0U93_03090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nch03400
]
A0U93_03090
Enzymes [BR:
nch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0U93_03090
DNA repair and recombination proteins [BR:
nch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0U93_03090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AQS87091
UniProt:
A0A1U9KMR6
LinkDB
All DBs
Position
complement(647345..650806)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNDATSWPTIWGVPEAYTAFLLRHRLGEHAGPLLHIARDDAAVAALAELLGYTAPEVEVL
RFPAWDCLPYDRVSPNPSITAERAGTLTRLLEPSSTRRIVLTTVHALIQRVPPRKAFEGQ
SLSIRAGESLDQGMLIDLLIASGYTRTDTVMEAGEFATRGGIFDLYPAAESEPVRLDLFG
DEVENIRRFDVGSQRSTGSLSQFDLRPVSEYALGPDSISRFRSGWRDLFGPAAASDTIYE
NVSDGRRYPGLDHYLPLFHDGTDTLIDYMPDAAVSADHQVPDIFAARLEMIADHYEARRA
PVREGEMPYRPLPPHRLYLDRDGWDAMLSRVPRAMLSPFAKPDLTEGFDAGGRPGPLFAR
GKDGDREGVFEAFAMQVANWAKAKRRTYVTAWTRGSRERIAALLREHDIASEMHESWSTA
AGIAPGVVGLLTLGLERGFVGDRFALVSEQDLLGERISRPPRRKRRAEQFITEASEIAEG
DLVVHADYGIGRYEGLETVSDGVAPHDCLRLLYDGAQKLFLPVENIELLSRFGSDQGGVA
LDKLGGQAWQARKAKMKSRIRDMAAELIRTAAGRALKDAPTLAPAEGLWDEFCARFPFVE
TDDQSRAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGVQVAVVVPTTLL
ARQHFRSFSTRFEGFPVRVAQLSRLVTAKEATEVRRGLADGTIDIVVGTHALLARNVALG
NLGLLIIDEEQHFGVGHKERLKSLREDVHVLTLSATPLPRTLQLSLSGVREMSLIATPPT
DRLAVRTFITPFDSVMIREAIQRERFRGGQVFCVVPRIDDMDRMAERLRDIVPDAKTVQA
HGRLTPSELERVMTEFSDGKFDVLLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRG
RVGRGKQRGYAYLTWPQTHRLSPASEKRLEIMQTLDTLGAGFTLASHDLDLRGAGNLLGD
EQSGHIKEVGIELYQQMLEDAVADLRAEKGRRRAEDENWTPNIVLGLPVLIPDAYVPDLP
VRLGLYRRIAGLNGEAEVDAMRAELVDRFGSLPPEVENLLDVVVIKRLCRIAGVDRLEAG
PKGMVIQFRNRAFRNPGGLLSWVERHRDQGVKLRPDHKLAVVREMTNAQRITMARKVMGA
MKKLVDKVEKVDA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgcaacctcctggccgaccatctggggcgtgccggaagcttacaccgctttc
ctgctgcgccatcggctcggcgaacatgcagggccgctcctgcatatcgcgcgggatgac
gccgccgtcgcggctctggcggaattgcttggctataccgcgccggaagtcgaggtgctg
cggttccccgcgtgggattgtcttccctacgatcgggtttcgcccaatccgtcgatcacc
gccgagcgggccgggacgctgacacgcctgctggagccttccagcacccggcgtatcgtc
ctgaccaccgttcatgcgcttatccagcgggtgccgccgcgaaaggcgttcgaagggcaa
tccctcagcattcgcgccggcgaatcgctcgatcagggcatgttgatcgatctgttgatc
gcaagtggttacacgcgcaccgatacggtaatggaagcgggcgagttcgcgacgcgtggc
gggattttcgatctgtatcccgcagcggaaagcgaaccggtccggctcgatctcttcggt
gacgaggtcgagaacatccggcgtttcgatgttggttcgcagcgctcgaccggctcgctt
tcgcaattcgatctgcggccggtttcggaatacgcgttgggtccggacagcatcagccgg
tttcgcagtggctggcgcgatctgttcggcccggcggctgcctcggacacgatttacgag
aatgtgtccgatggtcggcgctatccgggactggatcattatctgcctctgttccacgac
ggcacggacacgctgatcgattacatgccggatgccgccgtcagcgcggaccatcaggtg
ccggatattttcgcggcgcggctggagatgatcgcggaccactacgaggcacggcgggca
ccggtgcgcgagggcgaaatgccgtatcggcccctgccgccgcatcggctgtatctcgat
cgcgatggttgggatgcgatgctgtcgcgggtgccgcgtgcgatgctgagcccgttcgcc
aagcctgatctgacggagggattcgatgcgggtggtcgtccagggccgctcttcgcacgt
ggcaaggatggcgaccgggagggcgtattcgaggctttcgcgatgcaggtggcgaattgg
gcgaaagcgaagcgacgcacctatgtcacggcatggacacgtggttctcgcgagcggatt
gccgcactgctgcgcgaacacgacattgccagcgagatgcatgaaagctggagcacggct
gctggaatcgcgccgggtgtggtcgggctgctgacccttggcctggagcgcggctttgtc
ggcgaccggtttgccctggtgtcggaacaggatctgcttggcgagcgtatttcccggccg
cctcggcgcaagcgccgtgcggagcagttcattaccgaggcctccgaaattgccgaaggc
gatcttgttgttcatgccgattacggcatcggccgttatgagggactggagaccgtcagc
gacggcgtggcaccgcatgattgcctccgccttctgtatgacggtgcgcagaagcttttc
ctgccggtcgagaacatcgaactgctgagccgcttcggttcggatcagggcggtgtcgca
ctcgacaagctgggcgggcaggcgtggcaggcgcgcaaggccaagatgaagtcccgtatc
cgggacatggcggccgaactgattcgcacagcggcgggccgcgccctgaaggatgccccg
accctcgcaccggcggaggggttgtgggacgagttctgtgcccgcttcccgttcgtggaa
acggacgatcagtcccgggctatcgcggacgtgctggaggatatgagttccggtcgaccg
atggaccggcttgtttgcggcgatgtcgggttcggaaagacggaggtggcgttgcgtgcc
gcgttcgtggcggctctgtcgggcgtgcaggtggctgtcgtggtgccgacgacgctgctt
gcccggcagcatttccgcagtttctcgacgcgtttcgaaggtttccctgtccgggtggcc
cagttgtcacgtctcgtgacggcgaaggaagcgacggaggtccggcgaggtctggcggac
gggacgatcgatatcgtcgtcggcacgcatgccctgctggccaggaatgtggcgctgggt
aatctgggtctcctcatcatcgatgaggagcagcatttcggcgttgggcacaaggagcga
ctgaaatcgctgcgggaggacgtgcatgtgctgacgctctccgccacgccactgccgcgt
acgcttcagctttcgctttccggcgtccgggagatgagcctgattgcgacgccgccgacc
gatcggcttgcggtgcgcaccttcatcacgccattcgacagcgtgatgattcgcgaagcc
atccagcgggagcgttttcgtggcgggcaggtgttctgcgtcgtgccgcgcatcgacgat
atggaccggatggccgaacgtctgcgcgatatcgtgccggatgcgaagacggtgcaggcg
catggacggctgaccccctcggaactcgaacgggtcatgaccgagttttcggacggcaag
ttcgatgtcctgctgtccaccaatatcgtggagagcgggctggacatgccggccgtcaac
acgttgattatccaccgtgccgatatgttcggcctggggcagctctaccagttgcgcggt
cgcgtcgggcgcggcaagcaacgcggttatgcctatctgacgtggccgcagactcatcgt
ctctcaccggcatccgaaaagcggctggagatcatgcagacgctggatacactgggtgcg
ggctttacgttggcgtcgcacgatctcgaccttcgcggtgcaggcaaccttttgggcgac
gagcagtcgggtcatatcaaggaggtgggcatcgagctttaccagcagatgctcgaggat
gcggttgccgatctgcgcgcggaaaaaggccgccgtcgcgcagaagacgagaactggacg
ccgaacatcgtgctgggcttgccggtgctgataccggatgcctatgtgccggatctgccg
gtgcggctcgggctgtatcggcgtatcgccgggctgaacggtgaggcggaagtcgacgcc
atgcgggcggaactggtcgatcgtttcggcagtttgccgcccgaggtcgagaacctgctg
gacgtggtcgtaatcaagcgtctctgccggattgccggtgtggatcggctggaggccggg
ccgaagggcatggtcatccagttccgcaaccgtgctttcaggaaccctggcggattgctg
tcgtgggtggagcgtcatcgagatcagggcgtgaaactgcgacccgatcacaagctggcg
gtcgtgcgcgaaatgacgaacgcgcagcgaatcaccatggcgcgcaaggtcatgggcgcg
atgaagaagctggtggacaaggtcgagaaagtggacgcttga
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