Neisseria canis: NCTC10296_00124
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Entry
NCTC10296_00124 CDS
T06799
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nci
Neisseria canis
Pathway
nci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10296_00124 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nci03019
]
NCTC10296_00124 (rne)
03009 Ribosome biogenesis [BR:
nci03009
]
NCTC10296_00124 (rne)
Enzymes [BR:
nci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC10296_00124 (rne)
Messenger RNA biogenesis [BR:
nci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10296_00124 (rne)
Ribosome biogenesis [BR:
nci03009
]
Prokaryotic type
rRNA processing factors
NCTC10296_00124 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
VEE99013
UniProt:
A0A448D524
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All DBs
Position
1:complement(121075..123954)
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AA seq
959 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMQVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGDERQELKAAMAELDVPRGMSLIARTAGIGRSVEELQW
DFNYLLQLWQAIEEAGKAHQEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVSE
FMSYVMPSNVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPGGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHIACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVVLIPNIHLENPHY
EVTRVRVDDVDEDAAPSYKRVAEPEKEDTVPFAANKATKAARPEPAVKGVRHDQPAPVVE
EKKDSWWDNFKSWFKGLFGGGKKEEAKPEPQRKGNSRRNMKNSRHSGRRGGNRRNAARHA
DADAESGDKNREETSAQEQAKQPQNRRQSNRKEERNQERRDNRKERNEPRDSVTDETVKA
VQNEQQDNRRRNNRKGRNHEDAVPAVQVPAQTEAVDAVKKAAMADDAAVGNVAAEKTAKA
GKGNKAEQTAKAENADKQRRNNRERNERNRSNDRRGGRGEKKRNIPSAEKIERNLMIAAV
GDRVRDAVAHVFGENKAAPVVVSVTGFEEEVSNAPLVITIPEPVVDVPASVSVLFALEED
EDAAIIAQSSAKVKEAVRLILGEVEVAAGETAPQAEQPEPKQDTPAKPKRKAAAPKSKKP
ELDLGGLVLVQTDNSALAAAAQAEQPELPKGRRRSDVPRPAAQDSEAGEPLQQVETTSS
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgccacgcaagccgaagagctgcgcgtggcgattgtggat
ggccaaaccctgctggatttggacatcgaaacgctgggtaaagagcagcgtaaaggcaat
atctataagggtgtgattacccgcatcgaaccgtcgttggaggcatgtttcgttgactac
ggcaccgaccgccacggctttctcccgttcaaagaagtttcccgttcctattttcaagac
tacgaaggcggtcgtgcgcgcattcaggatgtgctcaaagaaggcatgcaggttatcgtg
caggtggaaaaagacgagcgcggcaataaaggcgcggccttaaccactttcatcagcctg
gccggacgctatctggttttgatgccgaacaatccgcgcggcggcggcgtgtcgcgccgc
atcgaaggcgacgagcgccaagagttgaaagcggcaatggcggaattggacgtgccgcgc
ggcatgagcctgatcgcccgcacggcaggtatcggcagaagcgttgaagaattgcaatgg
gatttcaattatttgctgcaattgtggcaggcgattgaagaagcgggcaaagcgcatcaa
gagccgtatcttttgtttatggaaagctcgctgctgatacgcgccatccgcgactatttc
cgacccgacatcggcgaaattctggtggataatcaggaagtgcatgatcaggtttcggaa
ttcatgagctatgtgatgccgagcaatgtcgggcggttgaagctttaccaagaccacacg
cccctgttttcccgtttccaaatcgagcatcagattgaaagcgcgttttcacgcagcgtg
agcctgcccggcggcggcgcgattgttatcgaccacaccgaagcactggtttcgattgat
gtgaactccgcccgcgctacacgcggcgccgatattgaagacacggctttcaaaaccaat
atggaagcggccgaagaagtggcgcgccagatgcgtttgcgcgatttgggcggcttggtg
gtaatcgattttatcgatatggaaaaccccaagcaccaacgcgatgtggaaaacgtgttg
cgcgatgctttgaagaaagaccgcgcccgtgttcagatgggcaaactttcccgtttcggc
ctgctggagctttcccgccagcgcttgaaacccgctttgggcgaaagcagtcatattgcc
tgcccgcgctgcgcgggtacgggcgttatccgcggcatcgaatcgactgcgctgcatgtg
ttgcgcatcattcaggaagaggcgatgaaagacaacaccggcgaagtgcatgcacaagtt
ccggtggatgtggcaaccttcctactgaatgagaagcgtgccgaattgtttggcatggaa
gagcgtttggatgtttcggtggtgctgatacccaatattcatttggagaatccgcattat
gaagtaacccgtgtgcgggttgacgatgtggacgaagatgcggcgccgagctataaacgc
gtggcagagccggaaaaagaagacaccgtgccctttgcggccaataaagcaaccaaagcc
gcgcgcccggaacctgcggtaaaaggcgtgcgccacgatcagcctgcgccggtggttgaa
gagaaaaaagattcctggtgggataactttaaatcttggtttaaaggcctgttcggcggc
ggcaagaaagaagaagccaagcccgagccgcagcgtaaaggcaacagccgccgcaatatg
aaaaacagccggcatagcgggcgccgcggcggcaaccgccgtaatgccgcccgtcatgcc
gatgcagatgccgagagcggcgataaaaaccgtgaggaaacaagcgcgcaagagcaagcg
aagcagccgcaaaaccgccgtcaaagcaaccgcaaggaagagcgtaatcaggagcgccgc
gacaaccgtaaagagcgcaacgaaccgcgtgattcggtaacggacgaaactgtgaaagcc
gttcagaacgaacagcaagacaaccgccgccgcaataaccgcaaagggcgcaatcatgag
gatgcggttccggcggtacaggtgccggcgcaaaccgaagcggttgatgcagttaagaag
gctgctatggcggatgatgcagcggttgggaacgttgcggcagaaaaaaccgccaaagca
ggcaaaggcaacaaggcggagcaaacagccaaggccgaaaatgccgacaaacagcgccgc
aataaccgcgagcgtaacgaacgcaaccgctcgaatgaccgccgaggcggacgcggtgag
aaaaaacgcaacattccttcagccgagaaaatcgagcgcaatctgatgattgcggctgtc
ggcgaccgggtgcgcgatgccgtggcccatgtgtttggtgaaaacaaagcggcgccggtg
gtggtttcggtaacgggttttgaggaagaggtttccaatgccccgctggttattacgatt
cccgaacctgtggtagatgtgcctgcttccgtgtctgttttgtttgcgcttgaagaggac
gaagatgctgctatcattgctcaaagcagtgcaaaagtgaaagaagccgtgcgcctgatt
ctgggagaggtggaagtggcggcgggagaaaccgcaccgcaagctgaacaacccgaaccc
aagcaggatacgcctgcgaaaccgaagcggaaagcggctgcaccgaagagcaaaaagccc
gaattggacttaggcggtttggtgttggtgcaaaccgataattctgctctggccgccgct
gcgcaagccgaacagcccgagctgccgaaaggccgccgccgctccgatgttccgcgccct
gccgcgcaggattcggaagccggcgaacctttacagcaagtggaaaccacttcgtcataa
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