Neomoorella carbonis: MCACP_08390
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Entry
MCACP_08390 CDS
T11049
Symbol
sigD
Name
(GenBank) RNA polymerase sigma-D factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ncj Neomoorella carbonis
Pathway
ncj02020
Two-component system
ncj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ncj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MCACP_08390 (sigD)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MCACP_08390 (sigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncj03021
]
MCACP_08390 (sigD)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ncj02035
]
MCACP_08390 (sigD)
Transcription machinery [BR:
ncj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MCACP_08390 (sigD)
Bacterial motility proteins [BR:
ncj02035
]
Flagellar system
Flagellar assembly proteins
Stator
MCACP_08390 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
Sigma70_ECF
HTH_Tnp_4
HTH_38
PhyR_sigma-like
GerE
UPF0122
DUF5713
CooC_C
Motif
Other DBs
NCBI-ProteinID:
WXJ94366
LinkDB
All DBs
Position
813581..814339
Genome browser
AA seq
252 aa
AA seq
DB search
MAVKDSAMWAAYLTGKGDAGRRELVLKYLPLVKYHVGRLAVKPPRHLDQEDLLGYGIIGL
LEAIDRYDPSRGVNFEYFASQRIRGAILDALRQSHWAPRTLVEKLRRVSRVYRRLEQEQG
SEVNDAAVAAAAGITVDELNELMERGSQMAILSLEDFLFDREGEEGATRGELLADPQSPD
PASRYEQEELRRALIEGLKHLNEKDRLVLTLYYYEGLTLKEIGKILGVSESRVCQLHGRA
ILNLRRYLADFI
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atggcagttaaggatagcgccatgtgggccgcgtacctgaccgggaagggcgatgccggg
cgccgggaactggtcctcaagtacttgcccctggtgaagtaccatgtgggccgcctggca
gtcaaaccgccgcggcacctggaccaggaagacttgcttggctatggcataatcgggttg
ctggaggccattgaccgctatgacccttcccgtggggtcaactttgaatactttgcctcc
cagcgcattcgcggggctatcctcgatgccctgcgccagtcccactgggccccccgcacc
ctggtggaaaagctgcgccgggtgagccgggtgtaccgccgcctggagcaggaacagggg
agcgaggtaaatgacgcagcggtggcggcggcggcggggataacggttgatgagctcaat
gaactcatggaacggggttcccagatggccatcctgtccctggaagattttctttttgat
cgggaaggggaagagggggccacccggggagaactgctggccgatccccagagcccggat
cctgccagccgttatgagcaggaggaacttcgccgcgccctgattgaggggctcaagcat
ctaaacgagaaagatcgcctggtccttaccctgtattattacgaaggtttgaccttaaag
gagatcggcaaaatactgggagtctccgaatcccgcgtctgccagctccacggccgggct
atattaaacctgcgccgctatttagccgattttatttag
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