Candidatus Nitrosotenuis chungbukensis: QVH35_05000
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Entry
QVH35_05000 CDS
T09234
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
nck
Candidatus Nitrosotenuis chungbukensis
Pathway
nck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QVH35_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nck03019
]
QVH35_05000
Messenger RNA biogenesis [BR:
nck03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QVH35_05000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
QVH35_05000
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Prok-RING_1
Zf_1st_IFT121
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
WKT58712
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Position
complement(728795..729340)
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AA seq
181 aa
AA seq
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MEDFVVPGDTLGSIEEMEAGNNTFDDGSKIRASTIGIANIDKKNKIAQVENGKRAAIPKK
GDIVIGTVAAVLSSMIAVAIHYINGKPNSSGVECICQNMDRRRIIARVNDVITLKIESHL
NGTIHATIDEPELGVLFTKCNICAGSVVPLRDRVKCPNCGFVEDRKISTNFEKSDFLKLR
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggaagattttgtcgtacctggcgatacgcttggctctattgaagaaatggaggcagga
aacaacacctttgatgacggcagcaagatcagggcatctacaattggaattgcaaatata
gataaaaaaaacaagattgcgcaggtggaaaacggaaaacgagctgcaataccaaaaaaa
ggtgacatcgtcataggtacagtggcagcagtattgtcatccatgattgcagtagccata
cattacataaacggcaaaccaaactcatcaggagtggaatgcatttgccagaacatggac
agaaggagaatcattgccagagtaaacgatgtcattacgctaaaaattgaaagtcaccta
aacggtacaatacatgcaacaattgacgagcctgaactaggagtgttatttacaaaatgt
aacatttgtgctggaagcgtagttccgctaagagacagagtcaagtgcccaaactgcgga
tttgttgaggaccgcaagatatcaaccaattttgaaaagagcgattttctgaagctaaga
gattaa
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