KEGG   Candidatus Nitrosotenuis chungbukensis: QVH35_05000
Entry
QVH35_05000       CDS       T09234                                 
Name
(GenBank) exosome complex RNA-binding protein Csl4
  KO
K07573  exosome complex component CSL4
Organism
nck  Candidatus Nitrosotenuis chungbukensis
Pathway
nck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nck00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QVH35_05000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nck03019]
    QVH35_05000
Messenger RNA biogenesis [BR:nck03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     QVH35_05000
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     QVH35_05000
SSDB
Motif
Pfam: ECR1_N Prok-RING_1 Zf_1st_IFT121 Cas12f1-like_TNB
Other DBs
NCBI-ProteinID: WKT58712
LinkDB
Position
complement(728795..729340)
AA seq 181 aa
MEDFVVPGDTLGSIEEMEAGNNTFDDGSKIRASTIGIANIDKKNKIAQVENGKRAAIPKK
GDIVIGTVAAVLSSMIAVAIHYINGKPNSSGVECICQNMDRRRIIARVNDVITLKIESHL
NGTIHATIDEPELGVLFTKCNICAGSVVPLRDRVKCPNCGFVEDRKISTNFEKSDFLKLR
D
NT seq 546 nt   +upstreamnt  +downstreamnt
atggaagattttgtcgtacctggcgatacgcttggctctattgaagaaatggaggcagga
aacaacacctttgatgacggcagcaagatcagggcatctacaattggaattgcaaatata
gataaaaaaaacaagattgcgcaggtggaaaacggaaaacgagctgcaataccaaaaaaa
ggtgacatcgtcataggtacagtggcagcagtattgtcatccatgattgcagtagccata
cattacataaacggcaaaccaaactcatcaggagtggaatgcatttgccagaacatggac
agaaggagaatcattgccagagtaaacgatgtcattacgctaaaaattgaaagtcaccta
aacggtacaatacatgcaacaattgacgagcctgaactaggagtgttatttacaaaatgt
aacatttgtgctggaagcgtagttccgctaagagacagagtcaagtgcccaaactgcgga
tttgttgaggaccgcaagatatcaaccaattttgaaaagagcgattttctgaagctaaga
gattaa

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