Candidatus Nitrosotenuis chungbukensis: QVH35_08110
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Entry
QVH35_08110 CDS
T09234
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nck
Candidatus Nitrosotenuis chungbukensis
Pathway
nck04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
QVH35_08110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nck03019
]
QVH35_08110
03009 Ribosome biogenesis [BR:
nck03009
]
QVH35_08110
04131 Membrane trafficking [BR:
nck04131
]
QVH35_08110
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nck04147
]
QVH35_08110
Messenger RNA biogenesis [BR:
nck03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
QVH35_08110
Ribosome biogenesis [BR:
nck03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
QVH35_08110
Membrane trafficking [BR:
nck04131
]
SNARE
SNARE associated proteins
Others
QVH35_08110
Autophagy
Aggrephagy
Other aggrephagy associated proteins
QVH35_08110
Exosome [BR:
nck04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
QVH35_08110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
AAA_14
CDC48_2
RuvB_N
AAA_2
AAA_22
AAA_5
TIP49
AAA_33
Sigma54_activat
TsaE
DUF815
nSTAND3
AAA_7
ATPase
RNA_helicase
Bac_DnaA
AAA_28
NACHT
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
WKT58933
LinkDB
All DBs
Position
complement(1196612..1198813)
Genome browser
AA seq
733 aa
AA seq
DB search
MTQNFTLLKVLEAYSRDVGKGIARLDYDSADSVAAATGDVLEIKGKKRTVAKCLPLYPSD
EGKGIIRIDGVTRNNLGIAIGDKVEVRKIRAVPAEKIIVAPLEAIPSIDERYLTESLENT
PLIVGDYVMVRYFGGRLTFQVIDISPAADAVIVTQKTTFVIGEKSESLQGIPHISYEDIG
GLTDEIRKVREMVELPMRHPEIFEKLGVEAPKGVLLYGVLGTGKTLLAKAVANESNAHFI
SISGPEIIGKFYGESEARLREIFKEAREKSPTIIFIDEIDSIAPKRDEVTGEVERRVVSQ
MLSLMDGLEARGKVIVIAATNRPNSLDPALRRPGRFDREIEIKVPQKKGRHEILLIHTRN
MPLADDVNLDKLASISHGYVGADLEYLCKEAAMKCLRRLLPEINLADEKISSEVLDKLIV
NADDYNNAFREIIPAGMREVYIENPDVSWNDIGGLTTVKQELQEAVEWPMKYPAFYRNLG
YRVPRGILLHGASGTGKTLLAKAVATESEANFISIRGPEPLSKWLGESERGIREIFRRAR
QSSPCVVFFDEIDSIASIRGMSGDTSVTERVVSQLLTEMDGIETLYGVVVIAATNRADMI
DPALLRPGRFDRTILVPMPDKEGRKKILEISTKEIPIDREVSSNGSKNPDYVDLEKIADA
SDGLSGADIASIANTAASIVIHEFLGKYPDPKEAEKQVNDAKVTMRHFEEALKKVKIQKD
IKIAEKIAVQYYM
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ataacccaaaattttactttgcttaaggttttagaagcatattcacgcgacgttggaaag
ggaatagcacgtcttgattatgactctgcagactcggttgccgcagcgacaggggatgtt
cttgaaatcaaaggaaagaaaagaacagtggcaaagtgcctgcccctttacccatcagac
gagggaaaaggcatcatacggattgacggcgttacaagaaacaatttggggattgcaatc
ggtgacaaagtcgaggtcagaaagataagggcagtgcctgctgagaaaatcatcgtggct
ccacttgaagcgattccgtcaattgacgagagataccttacagaatcgctagaaaacacg
ccactcatagtaggagactatgtcatggtgaggtattttggaggcaggttaacattccaa
gtaatagatatctcaccggcagcagacgcagtaatcgtaacgcaaaagaccacgtttgta
attggcgagaaaagcgagtccttacaaggaatcccgcacatatcatacgaggacataggc
ggcctgactgacgagatacggaaagtcagagagatggttgagctcccaatgaggcatccg
gaaatttttgaaaaacttggagttgaagcaccgaaaggtgttttgctttacggggtgcta
gggacaggcaagacacttttggcaaaggcagttgcaaatgaaagtaatgctcattttatc
agcatttcagggcctgagataattggcaagttttatggcgagagcgaggcaaggcttcgg
gaaattttcaaagaggcaagagaaaaatcaccgaccatcattttcattgacgagattgac
tcaatagcaccaaaacgcgacgaggtcacaggtgaggtagaaagaagagtagtctcgcaa
atgctttcgctcatggacgggctggaagcaagaggcaaggtaattgtcattgccgcgaca
aacaggccaaactcactggatccagcacttagaagaccggggagatttgacagggagata
gaaatcaaagtgccgcagaaaaaaggaagacatgagatacttttgatacacacacgaaac
atgccgctggcagacgatgtcaatttggataaacttgcgtcgattagccacggatatgtc
ggggcagacttggaatatctctgcaaagaagcggcgatgaagtgcttgagaagactattg
cccgaaatcaatttggcagacgagaaaatttcatccgaagtgctggataagctaatagta
aatgctgacgattacaataatgcgtttcgtgaaatcataccagctggtatgcgtgaagta
tacatagaaaatccagacgtttcttggaacgacataggcggcctgacaacggtaaagcag
gaattacaggaagcagtagagtggccaatgaagtatccagcattctatagaaatctaggc
tacagagtgcctcgcggaattttgctccacggggcaagcggcaccggaaaaacgctgctg
gcaaaagcagtggcaactgagagcgaggccaatttcatttcaattaggggtccagagcca
ttgtcaaaatggcttggagagtcagagaggggcataagagagattttcagaagggcgcga
cagtcatcaccatgcgttgtgttttttgacgaaattgactcaatagcatccatcagaggc
atgagcggagacacgtcggttacggaaagagttgtcagtcagctcttaactgagatggat
ggaatagaaaccctgtacggtgtagtcgtgattgctgcaacaaacagagcagacatgatt
gatcccgcacttttaagaccaggcagatttgacaggaccatactagtcccaatgccagac
aaagaaggcaggaagaaaattctggagataagtacaaaggaaatcccaatagacagggaa
gtcagctcaaatggcagtaaaaacccagactatgtagatttagaaaaaatagcagatgcg
tcagacgggctaagcggggcagatatcgcatccattgcaaatacggcagcgtcaattgta
atacacgagtttctaggaaaatatccggatccaaaggaagctgaaaaacaggtcaatgac
gcaaaggtaacaatgaggcactttgaggaagcgctaaaaaaagtgaaaatacaaaaagac
atcaagattgcagaaaagatagcagttcagtactacatgtaa
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