KEGG   Nitrosopumilus cobalaminigenes: C5F47_00105
Entry
C5F47_00105       CDS       T06688                                 
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
ncl  Nitrosopumilus cobalaminigenes
Pathway
ncl03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ncl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    C5F47_00105 (tfb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncl03021]
    C5F47_00105 (tfb)
Transcription machinery [BR:ncl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     C5F47_00105 (tfb)
 Prokaryotic type
  Archaeal type
    TFB
     C5F47_00105 (tfb)
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Baculo_ME53 Trm112p HTH_11 Zn_Ribbon_1 Sigma70_r4 RPA_interact_C HTH_AsnC-type Ribosomal_S27 Auto_anti-p27 Sigma70_r4_2 Cyclin_N Zn_ribbon_RRN7 RB_B A2L_zn_ribbon
Other DBs
NCBI-ProteinID: QLH02103
UniProt: A0A7D5R6I6
LinkDB
Position
15907..16812
AA seq 301 aa
MVSKTKEMCPRCAQGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNKARA
GAPTSLTMHDMGLATIINPINKDASGRPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQA
FSELNRLKDKLAISDSVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTSTPRNL
KDVEQAANIKRKDIARCYRLLVKELDLKMPVTDSVQCVARIASRIGIAEKTKRYATKVLK
MAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYKGLKESLE
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atggttagcaaaacaaaagaaatgtgtccacgatgtgctcaaggaaagttagttactgac
aatgagtctggagaaatgttctgctctaaatgtggatttgttattactgaaaaactccaa
gaagcaggtcctgaatggcgttcctttacacaagatgaaggtggcaacaaagcaagagcc
ggtgcaccaacatcactaacaatgcatgacatgggtcttgcaaccattatcaatcctata
aacaaagatgcatcaggaagaccactttcagcatctatgaaaagtacaattgagagatta
agaacttgggatagcagaagtcaggttcatgaacctgttgatagaaatttcagacaagca
tttagtgaattaaacagattaaaagacaaactagcaatttctgattctgtaattgaaaaa
gcagcttacatttacagaaaagctcttgaaaaaggactggttagaggtcgctccatttca
gcattaatggcatcagcactttatgcagcttgtagagatacttcaactccaagaaatcta
aaggatgtagaacaagcagcaaacatcaaaagaaaagacattgcaagatgttatcgatta
ttagttaaagaattggatttgaaaatgcctgtaactgattctgtgcaatgtgttgcaaga
attgcaagtagaattgggattgctgagaaaacaaaacgatatgcaaccaaagttttgaaa
atggcacaagaaaacgaggtatctgcaggaaaagatccaatgggtctagcagctgcagca
ttgtacttgtcatgtgtaaaaaatggtgaggataaaactcagcgtgatatcgcagaggct
gcaaatgttactgaagtaaccattagaaataggtacaaaggtctcaaagaatcactagag
ttgtaa

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