Nitrosopumilus cobalaminigenes: C5F47_02640
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Entry
C5F47_02640 CDS
T06688
Name
(GenBank) transcription factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C5F47_02640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncl03021
]
C5F47_02640
Transcription machinery [BR:
ncl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
C5F47_02640
Prokaryotic type
Archaeal type
TFB
C5F47_02640
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Auto_anti-p27
Cys_knot
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QLH02537
UniProt:
A0A7D5R0E3
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All DBs
Position
complement(457491..458444)
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AA seq
317 aa
AA seq
DB search
MNILEKQNCPECKSTLVDDMQNGEIICSGCGVVVDDQIADFGPETISSNFEDKMKLARAT
GQTTYSQHDLGITTEISISAKDFSGKTINHDVANQMHNLRKWQQRVRVSSPRERRLANVL
TKMGETCDGLSLSKNVLETASMIYRNLDGHVDVKGKSVVSITAATIYMACKQCDVVRSLE
EICRGICPAKDVKSKTKLAARYYRTMVMEMGQLHAPVVTMDKYISKIANMTQTEVRVERL
ALEIAEKTKDSNIADGKAPNGIAAAYLYVASVLLGQNVLQRDVSSVAGVTEVTIRNRCKE
ILTCYKLKITLRPSLAN
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
ttgaacatactagaaaaacaaaactgtcctgagtgtaaatctacattagtagatgacatg
cagaatggtgaaatcatctgttctggttgcggcgtagtagtcgatgatcagattgcagat
tttggtccagaaacaattagctcaaacttcgaagacaagatgaagcttgcaagagcaacc
ggacaaacaacatattcccaacatgatttgggaataactactgagatttcaatcagtgca
aaagactttagtggaaaaacaatcaaccacgatgtcgcaaatcagatgcacaatctcaga
aagtggcaacaaagagtaagagtttcctcaccaagagagagaagattagcaaatgtttta
acaaaaatgggagaaacatgcgatggtctaagtctttcaaagaatgtgttggaaactgca
tctatgatatacagaaacttggatggacatgttgatgtgaagggaaaatcagtagttagc
attacagctgctacaatttacatggcatgcaaacaatgtgatgtagtaagatcattagaa
gaaatttgccgaggaatttgtccagcaaaagatgttaaatcaaaaacaaaacttgcagct
agatactatcgaaccatggtaatggaaatgggacaattacatgccccagttgtaaccatg
gacaaatacatctcaaagatagcaaacatgacacagactgaggtcagagttgaaagacta
gccttggaaattgctgaaaaaaccaaagacagcaacattgctgatggaaaggctccaaac
ggaattgccgcagcatatctgtatgtagcatctgtcctacttggtcaaaatgtcctacaa
agagacgtttcaagtgttgcaggagtcacagaagtcactatcagaaatagatgtaaagaa
attctaacatgctacaaactcaaaattactttgagaccatctctggccaactaa
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