Nitrosopumilus cobalaminigenes: C5F47_05955
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Entry
C5F47_05955 CDS
T06688
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C5F47_05955 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncl03021
]
C5F47_05955 (tfb)
Transcription machinery [BR:
ncl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
C5F47_05955 (tfb)
Prokaryotic type
Archaeal type
TFB
C5F47_05955 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Ribosomal_S27
HTH_AsnC-type
Cyclin_N
RPW8
zf-CCHC_5
HTH_3
HEF_HK
TPR_5
RB_B
Lar_restr_allev
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
QLH03123
UniProt:
A0A7D5R8H1
LinkDB
All DBs
Position
992756..993664
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AA seq
302 aa
AA seq
DB search
MVKSTNPKDKCPRCGKGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKSR
AGVPTSLAMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQ
AFSELDRLKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRT
LKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRKATKIL
QTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVAL
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatcaacgaatccaaaagacaaatgccccagatgtggaaagggaacactagtt
acagatgcaaatacgggtgaaaatttttgtggaaaatgtggatttgtgatcactgacaaa
gtagaagaatcaggaccagagtggagatccttttcaaatgaaggggaaaacaaaagcagg
gcaggagttccaacatcacttgccatgcacgatatgggattggccacagtaattaatcca
caaaatagagatgcgacaggcaaaccattaactgctgcaatgaaaagcaccattgaaaga
ttaagaacatgggatagtagaagtcaggttcatgaacctgttgatagaaactttagacaa
gcatttagtgaattagacagattaaaagacaaacttgctgttggagattcagtaattgaa
aaagcagcttatatttacagaaaagcacttgaaaaaggtctggttagaggtcgctctatt
tcagcattaattgcatcagcattgtatgcagcatgcagagatacagaaactcctagaacg
ttaaaagacattggtcaagcaagcaatattaaacgaaaagacattgcaagatgttatcga
ttattactaagagagttaaatttgaaaatgccagtagtagatccagtaaaatgtatttca
agaattgcaagtaaagcaggactatctgaaaaaacaaaaagaaaagcaactaaaatatta
caaacagcagaagagcaaaaaatatcagcaggcaaagatccaatgggattagcagctgca
gcattgtatgttgcatgcgtgacaaatggtgaaaataaaactcaaagagatgttgcagaa
gccgcaggggtaacagaagttacaattagaaatagatacaaaggtttgaaagtagcatta
aatttgtaa
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