Nitrosopumilus cobalaminigenes: C5F47_06540
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Entry
C5F47_06540 CDS
T06688
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C5F47_06540 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncl03021
]
C5F47_06540 (tfb)
Transcription machinery [BR:
ncl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
C5F47_06540 (tfb)
Prokaryotic type
Archaeal type
TFB
C5F47_06540 (tfb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Zn_Ribbon_1
RB_B
Zn_ribbon_tTFIIB
Ribosomal_L37e
HTH_AsnC-type
Cyclin_N
Sigma70_r4_2
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QLH03840
UniProt:
A0A7D5QZW1
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All DBs
Position
complement(1093097..1094029)
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AA seq
310 aa
AA seq
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MVQETINADSTCGRCGKNSMLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGGADP
TRTGAPTSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNL
RQALSELSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETP
RTLKDVSDAGNIKKKDISRCYRILHQELELKMPVVDPVQCVARIASSIGITEKTKRYAVK
VLKDAQAHEESAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYKGLRL
DQNMDMMGGK
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagaaacaatcaatgcagattcgacctgtggtcgttgtggaaaaaattccatg
ctaactgacaatgttaccggagaacgattctgtggtaaatgcggttatgtgattactgaa
acattacaggattcaggacctgaatggagatcattttcaaaagaaggtggcgcagatccg
actcgaacaggagcccctacatcacttgcaatgcatgaccgaggtcttgcaactattatc
agtccaatgaacaaagactcctcaggaaaaccattaacctctacaatgaagagtactatt
gaaagactacgaacttgggatagtagaagtaaagtaaatgcttcatctgataaaaatctc
agacaagcattaagtgaattatctacattaaaagacaaattatcattatctgacgcagtt
attgaaaaagcatcttacatttacagaaaagcattagagaaaggacttgttaagggtcgt
tctatttctgcattaattgctgcatctctttatgctgcatgtagagacacagaaactcct
agaactctaaaagatgtttcagatgcaggtaacataaagaaaaaagatatttcaagatgc
tatagaattttacaccaagaattagaactaaagatgcctgttgtagaccctgtacaatgt
gttgcaagaattgcaagctctattggaattacagaaaaaacaaaacgatatgcagttaaa
gttctcaaagatgctcaagctcatgaagaatctgcaggaaaagatccaatgggattagct
gcagcagcactatacttgtcttgtgttaaaaatggtgaggataaaactcaaagagacatt
gcagaggcagcaaatgttacagaagtaacaattagaaatagatacaaaggcttgagatta
gaccaaaatatggatatgatgggaggaaaataa
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