Nitrosopumilus cobalaminigenes: C5F47_06580
Help
Entry
C5F47_06580 CDS
T06688
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5F47_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncl03019
]
C5F47_06580
03009 Ribosome biogenesis [BR:
ncl03009
]
C5F47_06580
Enzymes [BR:
ncl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5F47_06580
Messenger RNA biogenesis [BR:
ncl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5F47_06580
Ribosome biogenesis [BR:
ncl03009
]
Prokaryotic type
rRNA helicases
C5F47_06580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
CMS1
AAA_30
SUKH_5
Motif
Other DBs
NCBI-ProteinID:
QLH03231
UniProt:
A0A7D5M0X2
LinkDB
All DBs
Position
1100018..1101334
Genome browser
AA seq
438 aa
AA seq
DB search
MTKFQDLGLSDDVLKGITDQGFEEAFPIQEAVIPVLLSGRDVVGQAHTGSGKTAAFALSM
LEEIQPKQGIQGLIMAPTRELAMQITDEIKKFGKHTGIRIATVYGGQGMGIQLDALHRGV
EIVVATPGRLIDHLKRGSIELRDISHIVLDEADTMLDMGFVDDISFILDLAPEQRVMSLF
SATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPIKGQ
IIVFCSTKYRTRDVAKFLHQEKYNAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVVNYDVPNQEMAYFHRIGRTARAGAKGRAITFVSYSSVGDWNLVKRQIKVP
ITDLNKEMGIQISIPDPLKRQTPSRRYGGQSRSNYSRGGRSGGYGGSRRGGNPRDDRGGR
RRNDREGNRNSYGGRSRW
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagatttaggattaagcgacgatgtgctgaaaggaattactgatcaa
ggtttcgaagaagcatttccaattcaagaagcagttatcccagtactactttcaggaaga
gatgttgtaggacaagcacatacaggttcaggaaaaaccgcagcgtttgcactatccatg
ttagaagagattcaaccaaaacaaggaattcaaggtttgatcatggcaccaacaagagaa
cttgctatgcaaattaccgatgaaatcaaaaaatttggaaaacatacaggaatcagaata
gctacagtgtacggcggacaaggaatgggaattcaattagatgccttgcacagaggagtt
gaaattgttgttgcaactccaggcagattaattgaccatctcaaaagaggttcaattgaa
ctgagagatatttctcacattgttcttgatgaagcagataccatgttagatatgggattc
gttgatgatatttcatttattttagatttagcacccgaacaaagagtaatgtcattgttt
tctgcaacaatgccaacagagattttaagactttcagaagaatatttgaataatccaaaa
caattcttgttagatgcagatgatctcagtggtgaaggaattgaccaatcatatttagta
atcaaagacagagacaaattcaagtatctgattgactttatcaagccaattaaaggacaa
attattgtattttgttcaactaaatatagaactagagatgttgcaaagtttctccatcaa
gaaaaatacaatgcagtagctattgaaggagacatgtcacaacacagaagagagcaatcc
atgggtaaatttagaagcggtaaagcagacattcttgttgcaacagatgtagcatcaaga
ggaattgatgtaccaagagtagaactagtagtaaattacgatgtaccaaatcaagaaatg
gcatacttccacagaattggaagaactgcaagagcaggtgcaaaaggaagagcaataaca
tttgtttcatattcatcagtaggagattggaatctagtcaaacgtcaaatcaaagttcca
attaccgatttaaataaagaaatgggaattcaaatctcaattccagacccactaaaaaga
caaacaccttcaagaagatatggcggacaatcaagatccaactattccagaggaggacgt
tctggtggatatggaggttctagaagaggaggaaatccaagagacgacagagggggtaga
agaagaaatgatagagaaggaaatagaaacagctacggcggacgtagtagatggtaa
DBGET
integrated database retrieval system
