Nitrosopumilus cobalaminigenes: C5F47_06660
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Entry
C5F47_06660 CDS
T06688
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ncl
Nitrosopumilus cobalaminigenes
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncl03016
]
C5F47_06660
Enzymes [BR:
ncl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
C5F47_06660
Transfer RNA biogenesis [BR:
ncl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
C5F47_06660
Prokaryotic type
C5F47_06660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QLH03247
UniProt:
A0A7D5M2M7
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All DBs
Position
complement(1110217..1111413)
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AA seq
398 aa
AA seq
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MIPNIDSKIGISVYSTKFDGIGGKIRVEPEDFKVTELLSDKATKSINDKDGYAVYKLKKK
KIDTNHALSGIFRKTGVRLKSLGLKDASAITEQFVCSGHKGKPVDDFSSDKYSLEKIGFV
KKQLSKKDMVGNHFTLKISECQNRLESFTEHDKILNFYGYQRFGSQRPVTHLIGKAILHR
DFDKVIDLILSFTSSYDSKENTEIREKLSDKNNYKQYFDQVPVQMDIERIVLKEMIEHGE
SIRAIRAIPVSLRRFYIQAYQSFIFNQSLSSAFQDGENLFEAESGDVCFDNHSIIGKYVK
GMDQNLALPFVGYSYYKKTRFDFQISKILRQEEITPKDFFIKEMQEVSSEGGFRQAAIHC
TDYSAHGNVVDFSLSRGSFATILLREIMKPTDPILAGF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgatacctaacatagattctaaaattggcatttctgtatacagtacaaagtttgatggg
attggagggaagattagagttgaacctgaagatttcaaagtaactgaattactttcagat
aaagcaacaaaatcaatcaatgataaagatggatatgctgtatacaaactaaaaaagaaa
aagattgatacaaaccatgcattatctggaatttttagaaaaaccggagtccgcctaaaa
tctcttgggttaaaagatgcatcagctattacagaacaattcgtttgctccggacacaaa
ggtaaacctgtagatgatttttctagtgataaatattcccttgaaaaaattgggtttgta
aaaaaacaattatcaaaaaaagatatggttggcaatcatttcactttaaaaatctctgaa
tgtcaaaatagattggaatcttttacagagcatgataaaattctcaatttttatggatac
caaagatttggttctcaaagacctgttactcatctaattggtaaggccatattgcatagg
gattttgataaagtcatcgatttaatcttgtcttttacatcttcatatgattccaaagaa
aataccgaaattcgtgaaaaattgtctgataagaataactataagcaatattttgatcaa
gttccagttcaaatggatattgaaagaattgtactaaaagaaatgattgaacatggtgaa
tctatccgtgcaattagagcaatccctgtctcgttgcgacggttttacatacaagcttac
cagtcttttatttttaatcagtctttgagttctgcatttcaagatggtgaaaatttgttt
gaggctgaatctggagatgtttgttttgataatcatagcataattgggaaatatgttaaa
ggaatggatcaaaatttggcattgccctttgtaggctattcatattacaaaaaaacaaga
tttgattttcaaatctctaaaatcttgagacaagaagaaattactccaaaagatttcttc
attaaagaaatgcaagaagtaagtagcgaaggtggttttagacaagctgcaattcattgt
acagattactctgcacatggtaatgttgtagatttttcattgtctagaggctcatttgct
acaattttgttacgagaaattatgaaacctacagatccaattcttgccggattttag
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