Nitrosopumilus cobalaminigenes: C5F47_08425
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Entry
C5F47_08425 CDS
T06688
Name
(GenBank) transcription factor
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C5F47_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncl03021
]
C5F47_08425
Transcription machinery [BR:
ncl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
C5F47_08425
Prokaryotic type
Archaeal type
TFE
C5F47_08425
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
TrmB
Sigma70_r3
zf-C3HC
DUF7086
EDR4-like_1st
Motif
Other DBs
NCBI-ProteinID:
QLH03558
UniProt:
A0A7D5R1E5
LinkDB
All DBs
Position
1413252..1413767
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AA seq
171 aa
AA seq
DB search
MVDKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGK
SLITGIRVKDERKGWFVYRWRTRREEVEHFIENQKKKIDERLQQRLDYENASDFYHCGNE
DCPRVTFENALDGMFKCPSCQNVLNLKKNDKSKKAYQKKIDEIKKDMQQTF
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
ttggtagacaaatacgaagatccttttgtaagaattgcttcaatgattggaggagatgaa
tatctcaaagtagcaagatctcttctaaaggccgaagatgctacagatgaagaaatagca
agttctacaggtcttagaattaacatggtaagaaaagtattgtatgacctatttggaaaa
tcactaattactggaattagagtcaaagatgaacgaaaaggatggtttgtctatagatgg
agaaccagaagagaagaagtagagcattttattgaaaatcaaaagaagaaaattgatgaa
aggttacaacaaagattagattatgaaaatgcttcagatttctatcactgtggaaacgaa
gattgtcctagagtgacatttgaaaatgcacttgatggaatgttcaaatgtccatcatgt
cagaatgtattaaatctaaaaaagaatgataagtctaaaaaagcatatcaaaagaaaatt
gatgagatcaaaaaagacatgcaacaaactttttga
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