Nitrosopumilus cobalaminigenes: C5F47_09285
Help
Entry
C5F47_09285 CDS
T06688
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl00260
Glycine, serine and threonine metabolism
ncl00460
Cyanoamino acid metabolism
ncl00630
Glyoxylate and dicarboxylate metabolism
ncl00670
One carbon pool by folate
ncl00680
Methane metabolism
ncl01100
Metabolic pathways
ncl01110
Biosynthesis of secondary metabolites
ncl01120
Microbial metabolism in diverse environments
ncl01200
Carbon metabolism
ncl01230
Biosynthesis of amino acids
ncl01240
Biosynthesis of cofactors
ncl04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
C5F47_09285
09102 Energy metabolism
00680 Methane metabolism
C5F47_09285
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
C5F47_09285
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
C5F47_09285
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
C5F47_09285
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
C5F47_09285
Enzymes [BR:
ncl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
C5F47_09285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
SelA
Ino80_Iec3
Myb_DNA-bind_3
Motif
Other DBs
NCBI-ProteinID:
QLH03882
UniProt:
A0A7D5R7Y4
LinkDB
All DBs
Position
1555711..1557033
Genome browser
AA seq
440 aa
AA seq
DB search
MAKSQNRQSYDKIFTKLKDHHKWFENSIPLIASENIPSPAVREAIISDFGNRYAEGWPGE
RVYAGCVYIDDVEFECMKLAKKLYKAKFADVRPISGVVANLAIYSAFTNPGDIMLAPSIP
AGGHISHGKKEHSGTAGLVHGLEIEFYPFDAEEMTIDVDKTKQKVKDLKKANRLPKMAMF
GGSLFLFPHPVKELSDFLKSYGMHINYDAAHVAGLIAGGKFQDPLREGADTMTMSTHKTL
FGPQGGLVLGSAEHEEVIKKATFPGLTSSHHIHHMAGKAVAFAEALEYGKDYAVQVIKNA
KIFAEALSDNGFKVLGESRGFTQSHQIAVNVLDYSDGGKVEADLEKANIIVNRQLIPGDI
KAGRNYFHPGGIRLGVSEITRLGMKKNEMQEIASLIKQVVIDKKDPKKLLSKVKSFRKDY
QKVKFCFDNKLGAYEYVKLR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcacagaatcgacaatcttatgataaaatttttacaaaattaaaggatcat
cacaaatggtttgaaaattcaattccattgattgcaagtgagaatattcctagtcctgca
gtaagagaagcaataatttctgattttggaaatagatatgcagaaggttggcctggtgaa
agagtttacgcaggatgtgtctacattgatgatgtagagtttgaatgcatgaagttagct
aaaaaattatacaaagcaaagtttgcagatgtaagaccaatttcaggtgttgttgcaaac
ttggcaatttattctgcatttacaaatccaggagacattatgttagcaccttcaattcca
gcaggtggtcatatttcacatggaaagaaagaacattctggtactgcaggtttggtacat
ggtttagaaattgaattttatccatttgatgctgaagaaatgacaattgatgtagataag
acaaaacaaaaagtcaaagatcttaaaaaagcaaaccgtttgccaaaaatggcaatgttt
ggtggttcattgttcttgtttcctcatcctgtcaaagaattatcagattttctaaagagt
tatggaatgcacatcaattatgacgcagctcatgttgcaggattaattgcaggaggaaaa
ttccaagatccattacgagaaggagcagacactatgactatgagtactcataagacgtta
tttggacctcaaggaggacttgttttgggttctgcagaacatgaagaagttatcaagaaa
gctacattccctggtctaactagtagtcatcacattcaccatatggctggaaaagcggta
gcttttgctgaagccttagaatatggaaaagattatgctgttcaagtaatcaagaatgcc
aaaatatttgctgaagccttgagtgataacggcttcaaagttttaggtgaaagtagagga
tttacacaatcacatcagatagctgttaacgttctagattattcagatggaggaaaagtt
gaagctgatttggaaaaagcaaacatcattgtaaatagacaactcattccaggtgatatt
aaagctggaagaaattatttccatccgggtggaatcagattaggagtttctgaaattaca
cgacttggaatgaaaaagaatgagatgcaagagattgcatccctgattaaacaagttgta
attgacaaaaaagatccaaagaaattgctctcaaaagtaaaatcattcagaaaagattat
caaaaagtaaaattctgttttgataacaaattgggtgcttacgaatacgtcaaactaaga
tag
DBGET
integrated database retrieval system