Neobacillus cucumis: QNK12_00310
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Entry
QNK12_00310 CDS
T09078
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ncm
Neobacillus cucumis
Pathway
ncm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QNK12_00310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncm03400
]
QNK12_00310 (mfd)
Enzymes [BR:
ncm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QNK12_00310 (mfd)
DNA repair and recombination proteins [BR:
ncm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QNK12_00310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
IstB_IS21
T3SS_TC
Motif
Other DBs
NCBI-ProteinID:
WHY94826
LinkDB
All DBs
Position
57591..61067
Genome browser
AA seq
1158 aa
AA seq
DB search
MEEGLKEQLIAGLSGSSRTIFAASIYEQMKRPIMFVTYNLLQAQKLYDDLVNLVNEKDVF
LFPANELIAAEMSIASPELKAQRIEALNYWSKNSRGILIAPISGLKKITPPKAMWKNYQL
SLKLGEDLDIERTLTTFVKMGYVRVEMVSTPGEFSVRGGIIDIYPLTESDPLRIELFDTE
IDSIRYFSLEDQRSKEKISEILIGPATEILLEDVNYSRIVERLEEGLAKSLKKLKDEKAK
IQLAQNIGYELELLKNQQKPDQVYKYLSLAYENAGSLLDYLPHNGLVFIDEISRVHEMNE
SLVKEEADWYTSLLGEGQIIHDLVISHDLHGLLQKRNFPVLYMSLFLRHVTNTSPQNIIN
VSCKPMQNFHGQMHLLKAEVDRWKKSNYSILVLGPDEERVKKLERVLEDYEIESSLLGEG
QEPLPGKVQIMRGNLQTGFELSIQKIAVITEEELFNKRVKKSTSRQKLSNAERIKSYSEL
RVGDYVVHVNHGIGKYLGIETLVINGIHKDYLHIRYQGTDKLYVPVEQIDLIQKYVGSEG
KEPKIYKLGGTDWKKVKKKVQSSVQDIADDLIKLYAEREAAVGYAFSPDGDMQREFETNF
AYQETEDQLRSIREIKKDMERLRPMDRLLCGDVGYGKTEVAIRAAFKAITDGKQVAFLVP
TTILAQQHFETLRERFQDFPINIGLLSRFRSKKQQTETIKGLKAGTVDIVVGTHRLLSKD
VIYRDLGLLIIDEEQRFGVTHKEKIKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIE
TPPENRFPVQTYVMEYNGSLVREAIERELARDGQVYFLYNRVEDIERKAEEISMLVPDAR
VTFAHGQMSENELESVMLSFLSGEFDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLY
QLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGN
LLGAQQHGFIDSVGFDLYSQMLKEAIEEKRGDLKEAERKTVEIDLEIDAYIPDSYIKDGH
QKIEMYKRFRGIQALEDAQELQEEMIDRFGEYPNEVAYLFQIAEMKVYALLNGVEQIKQV
KQDVTLLVNEKVSSKIDGHKLFKISSQFGRMVTPGMDGNKLKMTINVKGCEIAKWLHVAF
EMIKGLEASKKGEENPVT
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagggctaaaggaacagttaattgcagggttatcgggctcatcgaggaccatc
tttgcagcatccatttatgaacaaatgaaaaggccgattatgttcgttacctataatttg
ctgcaagcacaaaagctatatgatgatcttgtcaatctagtaaatgaaaaggatgttttt
ctttttccggcaaatgaactgatcgctgctgaaatgagtattgccagcccggaattaaag
gctcaaagaattgaagctttgaactattggagcaaaaatagccgcggaattttaatagct
cctatttctggcttgaaaaaaattactccgccaaaggctatgtggaaaaactatcaactt
tccttaaaactaggggaagacttagatatagagagaacgcttacaacctttgttaagatg
gggtatgtaagggtagaaatggtgtctactcctggagaatttagtgtacggggcggaatt
attgatatttatcctcttacagaatcagacccgcttcgtattgaactttttgataccgaa
attgattcgatccgttatttctcccttgaggaccaacgttccaaggaaaagatttctgaa
atcttaattggccctgcaacagaaattcttcttgaggatgtaaattacagtcgaatcgtt
gaaaggttagaagaagggttagcaaaaagcttaaaaaaattaaaggacgaaaaggctaaa
atccaactggcacaaaatattggatatgaattagagctgctaaaaaatcagcaaaagcct
gaccaagtctataaatacttatctcttgcctacgaaaatgctggtagtttactagattat
cttccgcataacggtttagtatttattgatgaaatcagcagggttcatgaaatgaatgaa
tctttagtcaaggaagaagcagactggtatacctccttattaggtgagggacaaattatc
catgacctggttatttcacatgacctacacgggcttttacaaaaaaggaattttccagtc
ctttatatgtctttatttctccgtcatgtcacaaatactagtccgcaaaatattattaat
gtttcttgtaagcctatgcaaaatttccatggacaaatgcatttgcttaaagcagaagta
gaccgttggaaaaaaagcaactattctattcttgtactcggccccgatgaagaacgggta
aaaaagctggagcgggttttagaggattatgaaattgaatcctcgcttttaggtgaaggg
caggagccattaccaggtaaagttcaaattatgagaggaaatctccaaactggatttgaa
ttatccattcaaaaaattgccgtgattaccgaggaagagttatttaataaacgagtgaaa
aaatctactagccggcaaaaactatcgaatgcggaaagaattaaaagctattccgagctc
cgggttggtgactatgttgttcatgtaaaccatgggattggaaaataccttggtattgaa
acacttgtaattaatggaattcataaggattatttacatattcgttatcaaggaacggat
aaactgtatgttcctgttgaacaaattgatttaatccaaaaatatgttgggtctgaagga
aaagagcctaaaatctataagcttggcggcactgattggaaaaaggtgaaaaagaaagtt
caatcctctgtccaagatattgcggatgatttaattaagctgtatgccgaacgtgaagca
gcggttggctatgctttctcacctgatggagacatgcaaagagaattcgaaacaaacttt
gcataccaagaaacagaagatcagttacgttctattcgtgagattaaaaaggatatggaa
agattgcgtccaatggaccggctcctttgcggcgatgttggttatggaaaaacggaggtt
gctattcgtgcggcctttaaagcaattaccgatggcaaacaggttgccttccttgtgcca
acaaccattctagctcaacagcattttgaaacattaagggaaagatttcaggacttccct
attaatattggtttgttaagccgttttcgttctaaaaagcaacaaacggaaacgataaaa
gggttgaaggcggggactgttgatattgtcgttggaacacaccgcctgctgtcaaaggat
gtcatttatcgtgacttagggctgttaattatcgatgaagaacaaaggtttggggttaca
cataaggaaaagataaagaggttaaaaacaaatgtggatgttttaacattaacagccaca
ccaattccaagaactctgcatatgtccatgctgggagttcgagatttgtcggtgatcgaa
acaccgcctgaaaatcgtttccctgtgcaaacctatgttatggagtataatggatcgctt
gtcagagaggccattgaacgggaactcgcccgtgacggacaagtatactttttatataac
cgggtagaggatattgaacggaaggcagaggaaatttccatgcttgtaccggatgcccgt
gtaacttttgcccatgggcagatgtcggaaaatgaattagagtctgtaatgttgagcttt
ttatccggagaatttgatgttctcgtcagtacaacaattattgaaacgggtgttgatatt
cctaatgtcaatacgttaatcgtctttgatgctgatcgaatgggactttcacagctttat
cagctgcgcggccgggttggaagatcgaatcgggttgcctatgcctattttacgtataga
aaggataaagttttgacggaggttgccgagaaacgtttgcaggcaattaaggaatttacg
gagcttggctccggatttaaaattgcgatgcgggacctatccatcaggggtgccggtaat
ttattaggggcacaacagcatggttttattgattcggttggatttgatttgtattcacaa
atgttgaaggaagccattgaggaaaagcggggcgaccttaaggaagctgaaagaaaaacg
gttgaaattgatttggaaattgatgcgtatattccggattcctacattaaggatggacat
caaaaaattgaaatgtataagcgcttcaggggtattcaagcattagaagatgcacaggag
cttcaagaggaaatgattgaccgttttggcgaatatccaaatgaagtagcatacctcttc
caaattgcagaaatgaaggtttatgcccttctaaatggtgttgaacaaataaagcaagtg
aagcaggatgtaacattgttagtgaatgaaaaagtaagcagcaagattgatggccataag
ctgtttaaaatcagcagtcagtttggaagaatggttaccccaggaatggatggcaataaa
ttaaaaatgaccatcaatgtaaaagggtgcgaaatagcaaaatggcttcatgttgctttt
gaaatgataaaggggcttgaagcatcgaaaaagggcgaagaaaatccagttacttaa
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