Neobacillus cucumis: QNK12_01200
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Entry
QNK12_01200 CDS
T09078
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncm
Neobacillus cucumis
Pathway
ncm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNK12_01200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncm03019
]
QNK12_01200
03009 Ribosome biogenesis [BR:
ncm03009
]
QNK12_01200
Enzymes [BR:
ncm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QNK12_01200
Messenger RNA biogenesis [BR:
ncm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QNK12_01200
Ribosome biogenesis [BR:
ncm03009
]
Prokaryotic type
rRNA helicases
QNK12_01200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WHY92183
LinkDB
All DBs
Position
217969..219444
Genome browser
AA seq
491 aa
AA seq
DB search
MTKFQDLGISQETLKAVLKMGFEEATPIQAETIPLSLENKDLIGQAQTGTGKTAAFGIPL
VEKVDTSVEAIQGIIIAPTRELAIQVSEELYKIGAGKRVRVLPIYGGQDIGRQIRSLKKA
PHIIVGTPGRVLDHINRKTLRLDHVHTAILDEADEMLNMGFIEDIETILAEIPTERQTLL
FSATMPGPIQRMAEKFMKNPQIVRVKAKEMTVPSIEQYYVEVQEKNKFDVLTRLLDIQSP
ELAIIFGRTKRRVDELAEALNLRGYTAEGIHGDLSQAKRLSVLRKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFITPREKSYLNVVEKTTK
RKMERMKPPTLDEALEGQQRAVVDKILQTIESNNLQYYKAAAEELLEANDASTVVAAVLK
MLTKEPDTTPVKLTEEQPLPQKRERRPQDRDRRRRDDSRGFNSDRRKKSPVKPRSGEKRT
SGKSKPRSYNH
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaagtttcaagatttaggtattagccaggaaacattaaaggctgttctcaaaatg
ggttttgaggaagcaacgccaatccaggcagaaacaattccgttgagcttagaaaataaa
gatttgatcgggcaggctcaaactggaacaggaaaaactgctgcgtttggtattccattg
gtagaaaaagttgatacaagtgtagaagcaatccaagggattattattgctccaacccgt
gaacttgcgattcaagtatcggaagaactatacaaaatcggagcaggtaaaagggttcgc
gttttaccaatttacggaggacaggatattggccgccaaatccgctctctaaaaaaggct
ccacatattattgttggaacaccaggtcgtgtgcttgaccatattaatagaaaaacactc
cgactagaccatgttcatacagctatcctagacgaagccgatgaaatgttaaacatgggt
ttcattgaagatattgaaacgattttagcggaaatccctactgagcgccaaaccttactg
ttctcagcaaccatgccgggaccgattcagcgaatggctgaaaagtttatgaagaatccg
caaattgtccgagtcaaagcaaaagaaatgactgttccttccattgaacaatattatgtg
gaagtgcaggaaaaaaataaatttgatgtgctaacaagacttttggatatccaatcacca
gaacttgcgattattttcggacggacgaaacgccgtgtcgatgagttagcagaagcttta
aaccttagaggctatacggctgaaggaattcatggcgaccttagtcaggcaaaacgttta
tctgtccttcgtaaatttaaagagggctcaattgatgttcttgtcgctacagatgtggca
gcaaggggccttgatatctctggtgtaacccatgtatataactttgatattcctcaagat
cctgaaagctatgttcaccgtattggacgtacaggtcgtgcaggtaaaacaggggttgcg
atgacctttattacaccaagggaaaaatcttacctgaatgtggttgaaaaaactacaaaa
cgtaagatggaaagaatgaagccgccaacccttgatgaagcattagaaggacagcaacgt
gcggtagttgataaaattctacagacgatcgagtcgaataatcttcaatattacaaagca
gcagccgaagaattacttgaagcaaacgatgcttccactgttgttgcggctgtgttgaag
atgttgacgaaagaaccggatactactcctgttaagctgacagaagaacaaccgcttccg
caaaaaagggaaagaagaccacaggatcgggaccgcagacgaagagacgattctagaggg
tttaattctgaccgcagaaaaaaatcaccggtaaaaccaagaagcggtgaaaaaagaacg
tcaggcaaatcaaagccgagaagttataatcattaa
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