Nostocales cyanobacterium HT-58-2: BZZ01_24960
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Entry
BZZ01_24960 CDS
T04905
Name
(GenBank) DNA-directed RNA polymerase subunit beta''
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ncn
Nostocales cyanobacterium HT-58-2
Pathway
ncn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BZZ01_24960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncn03021
]
BZZ01_24960
03400 DNA repair and recombination proteins [BR:
ncn03400
]
BZZ01_24960
Enzymes [BR:
ncn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BZZ01_24960
Transcription machinery [BR:
ncn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BZZ01_24960
DNA repair and recombination proteins [BR:
ncn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BZZ01_24960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF6930
Motif
Other DBs
NCBI-ProteinID:
ARV61443
UniProt:
A0A1Y0RMY8
LinkDB
All DBs
Position
6044188..6048264
Genome browser
AA seq
1358 aa
AA seq
DB search
MNNNKMIFRNRIVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDD
LMVPPSKRSLLEAAEAEIRATEERYQRGEITEVERFQKVIDTWNGTSEALKDEVVNHFKR
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPLRSMTEGEKVLINL
GTRLLGRVIAEDVVHPKTGEVIAARNTPVSDDLAKHIEKSGVQEVVVRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVAKQVRAKSDG
TIRIPRKLRTRPYRTRHGEDAQYVEANGNIILEVITDNSDSPTNQEIAVTQGSTLYVVDG
QKIKTGQLLAEVAIGGRTTRVNTEKAVKDVASDMAGEVKFADVIAEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVKNGDTIDSNGVLAETKLTTLHGGVVRLPEATPGKGTR
EIEIITASVVLDQATVTAQTAQGRNNYLVTTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGLLKYAGVDVQKKGKAKQGYEVVQGGTLLWIPEETHEVNKDISLLMVEDGQFVE
AGTEVVKDIFSQNSGVIEVTQKNDILREVVIKPGELLMVDDPEAVMGKDGTFIQPGEELL
GQVATELRYIEYVESPEGPALLSRPVVEFAVPNNPDVPSTTSVSQQTGRSIQLRAVQRLP
YKDSERVKTVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVADADDPEIQRLQLVIL
ESLVLRRDIAADATQGSTQTSLEVEDGQTIAPGAVIARTQILCKEGGIVRGVQKGTEAVR
RCLVLRHTDMTTTNLSAPPKVKVGDLVVEGVEIAPGVFAEESGQVVAVQKGEGKKAQGEV
TPSEESALTTQNYSVTLRVGRPYRVSAGAVLQVDDGDLVQRGDNLVLLVFERAKTGDIIQ
GLPRIEELLEARKPKEACILARRSGEVKVVYGDGDEAIAVKVIEPNGVVTDYPLGPGQNL
IIPDGAHITAGQALTDGPSNPHEILEIFFNLGSEEGVYVCASHALQKVQTFLVNEVQSVY
QSQGIDIADKHIEVIVRQMTSKVRVDDGGDTTMLPGELVELRQIEQVNEAMAITGGARAQ
YTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGT
GFNAYEEPGAIEDYAADMTSSVLDEVDDPLDMVLDDRTARSYQLDSPTLGDGFGTRRSPD
KSILDEDDFILPSAGDSDIDDLVEDEYEDDEEDDDEDY
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgaataataacaaaatgatttttcggaatcgtatcgttgacaaaggtcaactgaggaac
ttaatctcttgggcgtttacgcattatggtacggcgcggacagcagtgatggcggacaaa
ttaaaagatttgggattccgctacgcgaccaaagcaggagtttctattagtgttgatgat
ctgatggtgcctccttccaagcgatcgcttctagaagctgccgaagcagaaattcgtgca
acggaagaacgataccaacgaggagaaattaccgaagttgagcgattccaaaaagtaatt
gacacttggaacggaacttctgaagctcttaaagatgaggtggtcaaccacttcaagaga
acaaaccccctcaactccgtgtacatgatggcattctctggagcaaggggtaacatctcc
caggtgcgccaattggtcggaatgcgaggactgatggcagatcctcaaggggaaattatt
gaccagccgatcaaaacaaatttccgcgaaggactaaccgtaaccgaatacattatttcg
tcttatggtgctagaaaaggtctagtagacacagcgttgcggacggctgactctggttat
ctcacccgtcgcttggtggacgtatcccaagatgtgattattcgggaatttgactgcggt
accaccagaggaattcctttacggtcaatgacagaaggtgagaaagtcttgattaacctt
ggcacaaggttgctgggacgagtcattgccgaagatgtcgtgcatccaaagacaggagaa
gtcatagcagcacgcaatacccctgtttccgatgaccttgccaaacatattgaaaagtca
ggagttcaagaagtcgtcgtccgctctcccttgacttgtgaagccgcacggtctgtatgc
caacactgctatggctggagtttggcacacgctaagatggtggatctgggcgaagctgtg
gggatcattgcggcacaaagtatcggtgaaccgggcacccagctaacaatgcgtaccttt
cacacaggtggtgtcttctctggtgaagtcgcaaaacaagtacgcgctaaaagtgatggt
accatccgcattccccgtaaattgcgcacaagaccctaccgtactcgccacggagaagac
gcccagtatgtggaagccaacggcaacattattctagaagtcataacagacaactctgac
tccccaacgaaccaagaaattgccgttactcaaggttcaacactatacgttgttgatggg
caaaagattaaaacaggtcagttgttggcagaagttgcgatcggtgggcgtacaactcgt
gtcaatacagaaaaagcggttaaagatgtcgcttctgacatggctggggaagtcaagttt
gctgatgtcatagcagaacaaaaaactgaccgtcaaggtaacaccacaacaacagcagct
cggggtggattgatttggattctctctggggaagtttataacttaccccctggtgcagaa
ttagtcgttaaaaatggcgacaccattgactccaacggtgttttagcagaaaccaagtta
acgactttgcacggcggtgttgtccgcttacccgaagcgacaccaggcaaagggacaagg
gaaattgagattatcactgcctctgtggtattagaccaagcaacagtgacagcgcagact
gctcaaggtcgtaacaactacttagtcaccactggaaacaaccaagtctttaacctgaga
gcaaccccgggcaccaaagttcaaaatggtcaagtggtcgctgagttgattgatgaccgc
tatcgcacaaccactggtggattgctgaaatatgctggtgtggacgtccagaaaaaaggt
aaggcaaagcagggttacgaagtggtgcagggaggtaccctcctctggattcctgaagaa
acccacgaagtgaacaaagatatctccctactgatggtagaagatggtcagtttgtcgaa
gctggcactgaagtagtgaaggatatcttctcccaaaacagtggtgtgatcgaagtcact
cagaaaaacgacattctgcgggaagtggtcattaagccaggagaactgctgatggtagac
gatccagaagcagtcatgggcaaagatggtacctttattcaacctggtgaggaattatta
gggcaagtcgccacagagttgcgctacatcgagtatgtggaatcaccagaaggtccagca
ctattgagccgtccggtcgttgagtttgctgtaccaaataatccggatgtgccatcaacc
acatcagtgagtcaacaaactggtcgttcgattcaactgcgggctgtgcagcgtttgcct
tataaagattccgaacgcgtcaaaaccgtcgaaggtgtcgaactgttgcgaacccaactg
gtgttggagattgagcaggaaggcgaacaagaccataacgcttcccccttggcagcagat
attgaattggtagcggatgctgatgacccagaaattcagcgcttgcagctggtgattttg
gaatctttggtgcttcgtcgggatatagccgctgatgcaacccaaggcagtacccaaaca
agcttggaagtagaggatggacaaacaattgccccaggagcggtgatcgctcgtacccaa
atcttgtgtaaagaagggggtatcgtgcgaggtgtgcaaaagggaactgaagcagttcgc
cgctgcttagtcttgcgccatactgacatgactacaacaaatctaagcgccccacccaaa
gtcaaagttggtgatttggttgtggaaggtgtagaaattgcccctggagtctttgctgag
gaatctgggcaagtcgtggcagtacagaagggcgaagggaaaaaagcacaaggagaagtt
acgccttctgaggaatcagcgctgaccactcagaactactccgttacacttcgcgttggt
cgtccctaccgcgtcagtgctggcgctgtgttgcaggtagacgatggcgatttggtacag
cgtggtgataacttggtgttgctggtgtttgaacgcgccaagactggagacatcattcaa
ggtttgcccagaattgaggaactcctagaagcccgtaagccaaaagaagcgtgtatctta
gcacgtcgttcaggagaagtcaaggtagtttacggtgatggcgatgaagctattgcagtc
aaagtcattgaacccaatggagtcgtcaccgattatcccctgggaccaggacaaaacttg
attatcccggatggtgcgcatattacagcagggcaagcattgactgatggtccttccaat
ccccatgaaattttggaaatcttcttcaacctaggttctgaagaaggagtctatgtctgt
gctagccatgccttgcaaaaggtgcagacgttcttggtgaacgaagtgcaatcagtgtat
cagtcccaaggaattgatattgctgacaagcacattgaagtgattgtccgccagatgacc
tcgaaagtccgcgtggatgatggtggtgatacgaccatgcttcccggagaattggtagag
ttgcgccaaatcgagcaagttaatgaagcaatggcaatcactggtggggcgcgggcgcag
tacacccctgtcctgttgggtattaccaaagcatcattgaacaccgatagctttatttct
gctgcatccttccaagaaacaacgcgtgtcttgactgaggctgcgatcgaaggcaaatcc
gactggttgcgcggcttgaaggaaaacgtcattatcggacgattgattcctgcgggtact
ggcttcaatgcttatgaagaacctggtgcgatcgaggactatgctgctgatatgactagc
agtgtcttggatgaagttgatgatccactagatatggtgctggatgaccgcacagcccga
agctaccagctggattctcccaccctaggagatggatttggtacaagacgtagtccagat
aagtcgattttagatgaggatgattttattcttccttctgctggcgacagtgatatcgat
gaccttgtagaagacgaatatgaggacgacgaggaagatgatgacgaagactactaa
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