Nostocales cyanobacterium HT-58-2: BZZ01_26605
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Entry
BZZ01_26605 CDS
T04905
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncn
Nostocales cyanobacterium HT-58-2
Pathway
ncn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZZ01_26605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncn03019
]
BZZ01_26605
03009 Ribosome biogenesis [BR:
ncn03009
]
BZZ01_26605
Enzymes [BR:
ncn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZZ01_26605
Messenger RNA biogenesis [BR:
ncn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZZ01_26605
Ribosome biogenesis [BR:
ncn03009
]
Prokaryotic type
rRNA helicases
BZZ01_26605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARV61716
UniProt:
A0A1Y0RQR3
LinkDB
All DBs
Position
6436921..6438465
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AA seq
514 aa
AA seq
DB search
MNLSFLDLGISQERVQQLEKLGFTAPTNIQAQAIPLLLSGRDVVGQSQTGTGKTAAFSLP
IIDRLDVTQKAVQAVVLTPTRELAIQVHDAISDFIGTQGLRVLAIYGGQSIDRQMLQLKR
GVHMVVGTPGRVIDLLDRGSLKLDQVKWLVLDEADEMLSMGFIDDVEKILAQAPQERQTA
LFSATMPPSIRQLVNKFLHSPVTVAVEQPKAAPNKINQVAYLVPRHWTKARALQPILEME
DPESALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQLFERH
IRQSWQVLSIPSRTQIEARQIEKLQNQVREALTGERLASFLPMVSELSEKYDPQAIAAAA
LQIAYDQTRPAWLQSEADLPEEDLIPPTPKPRLRSNRRGEFSGDRTPRSAWVPSDGGTSE
GDKRTPKPKLRTGRRETSASPKKLGSSAARETAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttctagatttaggaatttcacaagagcgagttcagcaattagaaaaa
ttaggctttaccgcaccaaccaacattcaagcacaagcaattccacttctactatcgggt
cgtgatgttgtaggtcaatcccagactggaacaggaaaaacagcagcattttctctgccg
attatagatcggctagatgtaactcaaaaagctgtgcaagctgtggtactcacacccacc
cgtgagttagccatccaagttcacgatgctatcagtgacttcattggaactcaaggatta
agggttttagcaatctacggtggtcaatcaattgaccgtcaaatgttgcaacttaaacgc
ggcgttcacatggttgtgggtacacccggacgagtcatagacttgctcgacaggggtagt
ttgaagttggaccaagtgaagtggttagtcttagatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtcgagaaaattctcgctcaagcacctcaagagcgccagacagct
ctattttcagcaactatgccaccttcaatacgccagttggtgaacaagttcttacattcg
ccagtgacagttgctgttgagcagccaaaagccgctcctaacaaaatcaatcaagtcgct
tatcttgtaccacgtcactggaccaaagcaagagctttgcagccaattctagaaatggaa
gatccagaatcggctttaatctttgtccgcaccagacgtacagcagcagaactgaccaat
caactgcaagcagcaggtcacagtgttgatgaataccacggtgatttgtcacaacaagcc
agagaacggttattaacacggttccgtaatcgtcaagtacgctgggtcgtagcaacggat
attgctgcacggggtttagacgttgaccagttgtctcacgttatcaactttgacttaccc
gatagcgtagaaacttacgttcaccgcattggtcgtactggtcgtgctggtaaggaagga
acagcaatttctctggtacagccgtttgagcgacgcaaacaacaactgtttgaacgccat
atccgccaaagttggcaagtgctatcgattccttcacggacacaaattgaagcacggcaa
atagaaaaattgcaaaatcaggtgcgagaagctttaacaggtgagcgtttggcttcattt
ttaccgatggtgagtgaactgagtgaaaaatatgatcctcaagcgatcgcagcagctgcg
ttgcaaatcgcttacgatcaaacccgtcctgcttggctacaatcagaagctgaccttcca
gaagaagatctcataccaccaactcccaaacccagactacggtctaaccgtcgcggcgag
ttttctggcgatcgcacccctcgatccgcttgggttccatcagatggcggcacctcagaa
ggagacaaacgcactcccaagccgaaactgcggacaggacgtcgcgagacttctgcatct
ccaaaaaaactcggttccagtgcagccagagaaacagcttcttag
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