Nostocales cyanobacterium HT-58-2: BZZ01_30300
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Entry
BZZ01_30300 CDS
T04905
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ncn
Nostocales cyanobacterium HT-58-2
Pathway
ncn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZZ01_30300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncn03019
]
BZZ01_30300
03400 DNA repair and recombination proteins [BR:
ncn03400
]
BZZ01_30300
Enzymes [BR:
ncn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BZZ01_30300
Messenger RNA biogenesis [BR:
ncn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZZ01_30300
DNA repair and recombination proteins [BR:
ncn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BZZ01_30300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_38
HTH_5
GerE
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
ARV62348
UniProt:
A0A1Y0RUE2
LinkDB
All DBs
Position
complement(7288614..7290764)
Genome browser
AA seq
716 aa
AA seq
DB search
MSHNPNLEQALKYYFGYDSFRLGQREIVEQALQNRDLLVVMPTGGGKSLCFQLPALLKQG
LTVVVSPLIALMQDQVEALRDNGIAATFLNSSLNAYKVRSREEYILSGKVKLLYVAPERL
LSERFLPFLDLVHHQVGISALAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDIPVFALTA
TATERVRTDIIQQLGLNQPNIHIASFNRTNLYYEVRSKTKHTYAELLELIRETEGSGIVY
CLTRKKVDELTLKLQHDKISVLPYHAGLTDEERSKNQTRFIRDDVRVMVATIAFGMGINK
PDVRFVIHFDIPRNLESYYQESGRAGRDGEPSRCTLFYSYSDVKTIEFLINQKPDPQEQL
IAKQQLRQMIDYTEGTDCRRTIQLGYFGERFAGNCDGCDNCRYPKPIEDWTIEAMKFLSC
VARCKERFGMGHIIDVLRGAKTQKITQYEHDKLSTYGIGKDKTADEWRILGRSLLHQGLL
EQTSDGYAVLKLNALSWEVMRRQRIVSIAVPVVQKITWEEGNEKATEVELLLQRLRSLRK
QIADAQSVPPYVIFADSTLKLMAQIQPRTLTEFSKLSGVVSHKVSQYGEKFLAEIRAYRQ
EQGLIEQNSSPFFGLPSDTELLTLQLHQQGLSVTEIAAKRNLRPTTIIRHLCDLIEKNQS
VDLNLLVPVDKQQKILQVLEILGDISLTPIKEYLGDSYSFDEIRLIREKWRRESQK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacaatcccaatttagaacaagcgctaaaatattactttggctacgatagcttt
cgccttggacagcgagaaattgtagaacaagcgctacaaaatcgggatttactagttgtt
atgcctacgggtggtggaaagtctttgtgctttcaactaccagcacttctaaaacaaggt
ttaacagtggtggtgtcgccgctgatagctttgatgcaagaccaagtggaagcactacga
gataatgggattgcagcaacatttcttaatagcagtctcaatgcttataaagtgcgatcg
cgcgaagaatatatcctcagtggaaaagtcaaactgttgtacgtcgccccagaacgtctg
ctgagtgaaagatttctcccttttctcgatctcgtgcatcatcaagttgggatttctgcc
ctggcgatcgacgaagcacactgtgtctctgagtggggacacgactttcgtccagagtat
cgccaactcaagtcactgcgaaaacgctacccagatattcctgtctttgccctgacggct
acagcaactgagcgtgtccgtactgatattatccaacaactcggattgaatcaacctaac
attcatatagccagcttcaaccgcacaaacctttactacgaagttcgttctaaaacgaaa
cacacttacgctgaattgttggaactgattcgggaaacggaaggttcaggaattgtctat
tgcttgacacgcaaaaaagttgatgaactgactctgaaactacaacacgataaaatttca
gtcttgccttatcatgccggcttaactgatgaagaacgcagcaaaaatcaaactcggttt
attcgggatgatgtgcgtgttatggtagcaacaattgcctttggcatgggaattaataaa
ccggatgtgcggtttgtgattcactttgatattcctcgtaatttagaaagttactatcaa
gaatcaggtagggcaggaagagatggagaaccttctcgctgtacactcttctacagttac
agtgatgtcaaaacaattgaattcctcattaaccaaaaaccagatcctcaagaacagttg
attgctaaacaacaactgcggcagatgatagactacaccgaaggtaccgactgtcggcgt
acaattcagttaggttattttggtgaacgttttgcagggaattgtgatggttgtgacaac
tgtcgttatcccaaaccaatagaagattggacaatagaagccatgaagtttttatcttgc
gtggctcgatgtaaagaaagatttggcatgggtcatattatagatgtcttacgaggcgca
aaaacccaaaaaattacgcaatacgaacacgacaaactttccacctacggtattggcaaa
gataaaactgcagatgagtggcgaatattaggacgttctctgttgcatcaagggttgcta
gaacaaaccagtgatggttacgctgtcttgaaacttaatgccctaagttgggaagtcatg
cgacgacaacgaatagtttccattgctgttcctgtagtacaaaagataacctgggaagaa
ggaaatgaaaaagccacagaggtggaattgctattgcagaggttgcgatcgctacgtaaa
caaattgctgacgcgcaatctgtcccgccgtacgttatcttcgccgattcgactttaaaa
ttaatggcacaaatccaaccccgaaccttaaccgaattcagtaaactttctggggtagta
agtcataaagtttcccagtatggtgaaaaattccttgcagaaattcgcgcctatcgtcaa
gaacaaggtttgatagaacaaaattcctcacctttttttggcttaccttcagatactgaa
ttattgactttacagttacaccaacaaggtttgagtgtgacagaaattgccgccaaacgt
aatctacgtcctacgacaattattcgtcacctgtgcgatttaatagagaagaatcagtca
gtagatttaaatttattagttcctgtagacaagcagcagaaaatcttacaagttttagaa
attcttggcgatatttccctcacaccgattaaagaatatcttggtgatagctatagcttt
gatgaaattcgcttgataagagaaaaatggcgacgggaaagtcaaaaataa
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