Nostocales cyanobacterium HT-58-2: BZZ01_31585
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Entry
BZZ01_31585 CDS
T04905
Name
(GenBank) iron ABC transporter substrate-binding protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ncn
Nostocales cyanobacterium HT-58-2
Pathway
ncn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZZ01_31585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncn03019
]
BZZ01_31585
03016 Transfer RNA biogenesis [BR:
ncn03016
]
BZZ01_31585
Enzymes [BR:
ncn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BZZ01_31585
Messenger RNA biogenesis [BR:
ncn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BZZ01_31585
Transfer RNA biogenesis [BR:
ncn03016
]
Prokaryotic type
tRNA degradation factors
BZZ01_31585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ARV62569
LinkDB
All DBs
Position
complement(7565907..7568264)
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AA seq
785 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKLLEKKLGCEDEVSLQKLHIALEVLEKIGVLVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVESGYRAVPLDDRLLFELKVQAKNINLEQAVDHLAHVE
VLRYPLAQYPPVGRVVQILGSDAEAAADIDLVTCKHDLSRTFPESVQDAASKLPKKLLKA
DLKNRLDLRQKYTVTIVGNNSDSKVVENAFTIEQTTEGHWQLGFHIADVSHYIQPDEALD
REALKRGRSVYLGELVLPMLPEVVAERCALLPGSDRLTISFLITIDSKSGEALEWEIQPS
VVKVDASLSEQQAEAILTKKSTDVSSEAVELVQQLDTLRYLLRQVRLARGCLQLNLPPNQ
NPYHDEGTLGCVVVNDLPAHSLLTEFVLLVNQLMANHLNALGIPAIWRVQGAPDTEDVQE
MLKLAINLGVELSLDPEIDIQPLDYQQLTRVFAESASEQVLTYLLQDTLKPATYSTTKAA
HFGLALPEYIHFTAPLRRYPDLLLQRVFYALLEHGRDRRNTRVKERVNLRSSSSHGEINW
NVLPPELQQELQSDLTRVIVQLNDREKEVQEAEADLAGLQRASLMKQRIGEVFTGVITGV
QSYGFFVEIEVPPAESNSTTNPRVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGSDGAVFGKDIGISNGDDTDLYLSNEDMEPDDLEP
YGDDE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttctcgccaatttcactgatgataaattggtggctcgt
aaactgttggaaaagaaacttggttgcgaagatgaagtcagtttacaaaaacttcatatc
gccctggaagttctggaaaaaatcggggttttagtgaaagaacgtggcaagtatcgtcga
gtcacagaagaagggctgattgaagcaaaactccgttgttccagtaaaggcttttgcttt
gcaatccaagatgtagaaggagctgaagacatttacattcgggaaagccatctgagtaat
gcttggaatggcgatcgcgttttggttagggttctcaaagaaggtagtcgtcgtcggtcc
ccagaaggagaagtcaagttaatcttagaacgctccaatcacactttactagcacggatt
aaacaggtagaaagtggatatcgtgctgttcccttggacgacagactcctgtttgaactc
aaagtgcaagcaaaaaacataaacttggaacaagctgttgaccacctcgctcatgtggaa
gttctgcgttacccgttagcacaataccctccagtcggtagggtggtgcaaattttggga
agcgatgctgaagcggcggcggacatcgatttagtcacctgtaaacacgacctttcccgg
acttttcctgaatctgtacaggacgcagcctcaaaattacccaaaaagctgctaaaagca
gatttgaaaaatcggctggatttgcgtcagaagtacaccgtaactatcgttggtaacaat
agtgactccaaggtagtagagaatgctttcaccatagaacaaactaccgaaggacattgg
cagttgggctttcacattgctgatgtttctcactatattcaaccagatgaagctctggat
cgagaagcactcaagcggggacgatcagtgtatctgggagaattggtacttccaatgttg
ccagaagttgttgctgagcggtgtgctttattacccggaagcgatcgcttaaccatctct
ttcctcataacgattgattcaaaatctggggaagccttagagtgggaaattcaacccagc
gtcgtcaaagtagacgcctcattaagcgaacaacaagcagaggcaattctgacgaaaaaa
tctaccgacgtttcatcggaagcggtagaactcgtgcaacaactcgatactttacggtac
ctgttaagacaggtgcgcttggctcgtgggtgcttgcagttgaatctgccacccaatcaa
aacccgtatcatgatgagggcactctaggttgtgtggtggtcaatgatttacctgcacac
tcactgttaactgagtttgtgctactcgttaatcaacttatggctaaccacctcaatgct
ttggggattcctgccatttggcgagttcaaggcgcacctgataccgaagatgtccaagag
atgctgaaattagccattaatcttggtgttgaactgtcacttgatccagaaatagatatt
caacctctcgattatcaacagctaactagagtttttgcagaatcagcatctgagcaagtt
ctaacgtacttgttgcaagacacgctgaaaccagcgacgtacagtacaacgaaagcagca
cacttcggtctggcactcccagaatatattcatttcactgctcccttgcggcgttacccg
gatttgctgttgcaaagagtattttatgcgttactggaacacggacgcgatcgccgcaac
acccgtgtgaaagaacgtgtcaacttacgtagttcctcaagccatggtgaaattaactgg
aacgtcctaccgccagaattgcaacaggaactccaaagcgatttgaccagggtgattgtt
cagcttaatgatagagaaaaagaagttcaagaagcagaagctgacttagcaggattgcaa
agagcttccctgatgaagcagcgcatcggtgaggttttcactggtgtgatcacgggtgtt
caatcctacggattctttgtggagattgaagttccaccagctgagtctaactcaacgact
aatcctcgcgtacctctgcgagtggaaggactggtacacgtcagttctctcaaagacgat
tggtatgagtatcgcgccagacaacaagcattgtttggtcgcaaaaaccgtgcttcctat
agactgggcgatcgcgtagctgtgcaagtgaaaagcgttgactattaccgtcagcaaatt
gatttggtcactgttggtagcgatggcgcagtttttggtaaggatatcggcatctccaat
ggtgatgacacagacctctacttatcaaacgaggatatggagccagatgacttagaaccg
tacggtgatgatgagtga
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