Nitrosomonas communis: AAW31_01360
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Entry
AAW31_01360 CDS
T03942
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nco
Nitrosomonas communis
Pathway
nco02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AAW31_01360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nco03021
]
AAW31_01360
Transcription machinery [BR:
nco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AAW31_01360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
Terminase_4
Motif
Other DBs
NCBI-ProteinID:
AKH39390
UniProt:
A0A0F7KG12
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All DBs
Position
complement(305231..307162)
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AA seq
643 aa
AA seq
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MKASKKIKASNNDNVEEMVEETLSSAPQDIEARKMRLKKLIVQGKERGYLTYAEINDHLP
DDMLDAEQIEGVISMINDMGISVHDEAPDAEALLMSDTATAVTDEDVVEEAEAALSSVDS
EFGRTTDPVRMYMREMGSVELLTRESEIEIAKRIEDGLRHMIQAISACPTIIADILDLAT
EVENDRLRVDELVDGFLDDDAQEILNEEMSDEPLEQDFVSDDMEDESGVAVASASLIKLK
NDVLERFLEIREAYNEMQKIIEKNGSREDKKYKALQEKISSELMAMRFSAKMVEKLCDSQ
RDLVNEIRNCERKIMDLCVTKANMPRNYFIKGFPGNETNLEWVKSEVESNKPCGQSLRHF
MPAIMEQQQCLLSLQEQAKIPIKELKEINRRMTTGEAKARRAKREMTEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP
VHMIETINKMNRISRQILQETGQEPEPALLAEKMEMPEEKIRKILKISKEPISMETPIGD
DEDSHLGDFIEDSSTVAPADAAVYASLRNATKDVLDSLTPREAKVLRMRFGIEMNTDHTL
EEVGKQFDVTRERIRQIEAKALRKLRHPARSDRLRSFLDTGNS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatccaaaaaaattaaagcatcgaataatgataatgtagaagaaatggttgag
gaaaccttgtcatctgcgcctcaagatatcgaggcaaggaagatgcggcttaagaaattg
attgttcagggtaaggaacggggttatttaacttatgctgaaattaatgatcacttgcct
gatgatatgctagatgcagagcagattgaaggtgtcattagcatgatcaatgatatggga
atttctgttcatgatgaggcgccagatgcagaagcattattaatgtctgatacagcaact
gctgtaactgatgaggatgtggttgaagaggctgaggcagcgctttctagtgtagattcg
gaatttggtcgtactactgatccagtgcgcatgtatatgcgtgagatggggtcggtagaa
ttattgacacgcgaaagtgagatagaaatagcaaaacgtattgaagatggtttgaggcat
atgatacaggctatttctgcatgcccaacgattattgcagatattctagatttggcaacc
gaagttgaaaatgatcggttgcgtgttgatgaattggtggatggatttcttgatgatgat
gctcaagaaatccttaatgaagagatgtctgatgagccgcttgaacaggattttgtttct
gatgacatggaagatgagagcggagttgcggtagcgagcgccagcttgattaagttaaaa
aatgatgtgttagaacgttttttagagattcgcgaagcctataacgaaatgcaaaaaata
atcgaaaaaaatggttcgcgggaggataaaaaatataaagctcttcaggaaaaaatttca
tccgaactcatggctatgagattctcggccaagatggtggaaaaattatgtgattcacag
cgcgatcttgttaatgaaattcgcaattgcgagcgtaaaattatggatctgtgcgtcacc
aaagcaaacatgccaagaaattattttatcaagggttttcctggtaatgagaccaatctg
gagtgggttaagtcagaggttgaatctaataagccttgcggtcagtcactaaggcatttc
atgcccgctattatggagcagcagcaatgtttgctttctctgcaagagcaagccaaaatc
cctatcaaagaactgaaagagattaatcgccgaatgactactggtgaggctaaagcgcgg
cgtgcaaaacgtgaaatgacagaagctaatttgcgattggtgatttcgattgctaaaaag
tatactaatcgtggattacaatttttggatctcatccaagaaggtaatattggtttgatg
aaggctgtcgataaatttgaatatcggcgtggttacaaattttctacttatgcaacatgg
tggatacgtcaggcaataacacgttctattgctgatcaggctcgtaccattcgaattcct
gttcatatgattgaaacaattaataaaatgaatcgtatctcgcgtcagattctgcaagaa
acggggcaagagccagaaccagcattgttagccgaaaaaatggagatgcctgaagagaag
attagaaaaatcctcaagatttctaaagagccaatctcgatggaaacacctattggtgat
gatgaagattcccacttgggagattttatagaagattcatctactgtggcgcccgctgat
gctgctgtttatgctagtttgcgcaacgctactaaggatgtgctcgattctctgacgcca
cgagaggcaaaagttttgcgcatgcgttttggtattgaaatgaatactgatcatacctta
gaggaagttggaaaacagttcgatgttactcgtgagcgtattcgtcaaatagaggcaaag
gcattgagaaaactacggcatccagctcgttccgatcgcctgcgtagctttttggacaca
ggaaattcataa
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