Nymphaea colorata (blue-petal water lily): 116245646
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Entry
116245646 CDS
T07418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116245646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116245646
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116245646
Spliceosome [BR:
ncol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116245646
Complex C
U5 SnRNP specific factors
116245646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
116245646
NCBI-ProteinID:
XP_031472990
LinkDB
All DBs
Position
1:22597877..22608034
Genome browser
AA seq
2173 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDTRPRDTHEPTGEPESLWGKIDPKKFGDRVF
HGKPPELEEKLKKSKRKKEREPASVPLKRDSKRRKLQEESVLSLADEGVYRPKTKETRAA
YEALLGMIQQQFGGQPQDILSGAADEVLKVLKNDKTKNPDKKKEIESLLNPVSQQFFDQL
VSIGKLITDYEDGADAGNTGGTGEPIDDDIGVAVEFEDEEEDEESDLDQVQEPSEGEEDD
DVQDANGMGGMQMSHGIDDDELVEADEGLNVQDIDAYWLQRKISQAYENIDPQQSQKLAE
EVLKILAEGGKDKDVGNNVDRDVENKLVMLLNYEHFKLIKLITHNRLKIVWCTRLARAED
QEQKKLIEEEMLNGGPGLAAILEQLHATRATAKERQKNLEKSIREEARRLKDETGAGDRY
RRSDREGVGADNSWLKGQRQLLDLESIAFHQGGLLMSKKKCELPPGTFRTARKGYEEVHV
PALKAKPLTAGEELVKISSMPDWAQPAFAEMKQLNRVQSKVYETALFTPKNILLCAPTGA
GKTNVAMLTILQQIALYRNQDGSVNTSKFKIVYVAPMKALVAEVVGNLSKRLQSYGISVQ
ELTGDQTLSRKQIEDTQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV
LESIVARTVRQVETTKELIRLVGLSATLPNYEDVALFLRVDPSEGLFHFDNSYRPCPLAQ
QYIGITVKKPLQRFQLMNEICYEKVMGVAGKQQVLIFVHSRKETAKTARAIRDTALANDA
LGRFMNEDSASQEILRSESEKVKNNDLKDLLPYGFAIHHAGMARVDRTLVEELFADGHVR
VLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEG
IILTGHSELQYYLSLMNEQLPIESQFVSKLADQLNAEIVLGTVQNAREACTWIGYTYLYI
RMLRNPVLYGMAADVLENDQTLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRI
ASYYYITHETIATYNEHLKPTMGEIELYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIP
VKESLEEPSAKINVLLQVYISRLKLEGLSLSSDMVYITQSAGRLLRALFEIVLKRGWALL
TEKALNLCKMVTRRMWSVQSPLRQFRGIPNELLMKLEKKDLAWDRYYDLSPQEIGELIRF
PQMGKKLHKYVHQFPKLNLAAHVQPITRTVLKVELTITPDFQWDEAVHGYVEPFWVIVED
NDGEHILHHEYFILKMQYIDEDHTLNFTVPIYEPLPPQYFVRVVSDKWLGSQSVLPVSFR
HLILPEKYPPPTELLDLQPLPVTALRNPSYESLYQEFKHFNPIQTQVFTVLYNSDDNVLV
AAPTGSGKTICAEFALLRNHQKSSENVMRAVYVAPIEALARERYRDWEKKFGKGLGVRVV
ELTGETTSDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGHGGPV
LEVIVSRMRYISSQVENKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIH
IQGVDIANFEARMQAMTKPTFTAVVQHAKNGKPALVFVPTRKHARLTALDLVTYATADGG
ERPSFLLHSKEELSPFLSRIGEPTLIDTLHYGVGYIHEGLSSLEVEVVSQLFAAGWIQVC
VASSSMCWGMSLSAHLVVVMGTQYYDGRENAHTDYPITDLLQMMGRASRPLQDNAGKCVI
LCHAPRKEYYKKFVFEAFPVESHLQHFLHDNLNAEVVVGTIESKQDAVDYLTWTFMYRRL
AQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVAIEDDMYLSPLNLGMIASYYYI
SYTTIERFSSSLTPKTRMKGLLEILSSASEYSQLPIRPGEEELIRKLINHQKLPVEKPKY
NDPHVKANALLQAHFSRHTVIGNLAADKREVVLSAGRLLQAMVDVISSNGWFKLAISAME
LSQMVTQGMWADDPVLLQLPHFTKELARKCENERKIDSVFALVEMEDDERRELLQMSDSQ
LLDIARFCNRYPNIDINLEVLERDDIRVGENITLQVTLERDLEGRTEVGPVDAPRYPKAK
EEGWWLVVGDLKSNQLLAIKRVSLQRKSKVKLDFSAPSEVGRREYWLYFMCDSYMGCDQE
YAFEVDVKEMMEG
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatttgggaggcggtgctgaagcacacgcgcggttcaagcagtatgagtaccgg
gcaaactcgagtttggtcctgactactgacactcgtcctcgggacacccatgaacccact
ggggaaccggagtcgctctgggggaagattgatccgaagaaatttggcgacagagtgttc
catggcaagcccccagagctagaagagaagttgaagaagtcgaagagaaagaaggagagg
gaacctgcttctgtgccactgaagcgggacagcaagcgaaggaagcttcaggaagaaagc
gtgctctcgctggctgatgagggggtttatcggccgaagacaaaagagaccagagctgca
tacgaggctctgctcggaatgatacagcagcagtttggcgggcagccccaggacatactc
agcggggctgcggatgaggtcctgaaggtgctgaagaacgataagaccaaaaaccccgac
aagaagaaggagatcgagagtctgctgaacccagtctcacagcagttcttcgatcagtta
gtatctattggcaaactcatcactgattatgaggatggagctgatgcaggtaatactggg
ggcactggagagcccattgatgacgatattggtgtcgctgtagaatttgaagatgaagag
gaggacgaggagagtgacctggatcaggttcaggagccctcggagggggaagaggacgat
gatgtgcaggatgctaacggtatgggaggtatgcagatgagccatggcatcgatgatgat
gaactggtggaggcggatgaggggttgaatgttcaggatattgatgcctactggcttcaa
aggaagatatctcaggcttatgaaaatatcgaccctcaacagagccaaaagcttgcagaa
gaagtgctgaaaatattggctgaaggagggaaagataaagatgtgggcaacaatgtggac
agagatgtggagaacaaactggtgatgcttcttaattatgaacattttaagcttattaag
ctgatcacgcataataggttaaaaattgtatggtgtacccgcctggcaagagctgaggat
caagagcaaaagaagcttattgaggaggaaatgctgaacggtgggccaggtttagctgca
atccttgagcagcttcatgccacaagagccactgcaaaggagcggcaaaagaatttggaa
aagagtatcagagaggaggctagacggctgaaagatgagaccggggcaggggatagatat
cgtaggtccgatcgagaaggtgttggtgcagataacagctggttgaaaggacagcgccag
ctgttagatttggagagcattgcatttcaccaaggtggtctgttaatgtctaaaaagaaa
tgtgagcttcctcctggcacttttagaactgctcggaagggatatgaggaggttcatgtg
ccagcattgaaagcaaaacctttgacagcaggggaagaacttgttaaaatctcatccatg
ccagattgggcacagccagcatttgctgaaatgaagcagctcaacagggttcagagcaag
gtttatgagacagctctttttacaccaaagaatatccttctatgtgcacctactggtgct
ggtaagacgaatgttgctatgctgacaattctccaacagattgctctgtataggaatcaa
gacggatctgttaatacaagcaaattcaaaattgtatacgtagctcccatgaaagccttg
gttgctgaagttgttggaaacttatccaagcgtttgcagtcctatggcatctctgtccaa
gaacttactggggatcagacactctcccgcaaacagatagaggacactcagataatagta
acaacacctgagaaatgggatattattacaaggaaatctggtgaccgcacctatactcag
cttgtgaagctattgattattgatgagattcatcttcttcatgataacagagggcctgtt
cttgaaagtatcgttgctagaacggtaagacaagtagagaccacaaaagaacttatcaga
ctggttggtctatctgctacacttcccaactacgaggatgttgcattatttttgcgtgta
gacccttcagaaggtctgtttcattttgacaatagttacaggccctgcccacttgctcaa
cagtacattggaataactgtcaaaaagcccttgcagagatttcagctgatgaatgaaata
tgttacgagaaggttatgggtgttgcgggaaagcagcaggtgttaatctttgtccactcg
aggaaagaaactgcaaaaactgctcgtgctataagggacactgctcttgcaaacgatgcc
cttggacggttcatgaatgaagatagtgctagtcaagagattcttcggagtgaatctgaa
aaggtcaagaacaacgatcttaaagatcttcttccttatggttttgcaattcatcacgca
gggatggctagagtagacagaacacttgttgaggaactttttgctgatggacatgtaagg
gttttggtgtcaacagcaactcttgcgtggggtgttaacttgccggcacatactgtcatc
ataaaaggaacccaagtatataatccagaaaaaggtgcctggactgaactaagtccactg
gatgttatgcagatgcttggtcgtgcaggaagacctcaatatgactcgtatggggaaggg
ataatactgacaggccatagtgagctgcagtattatctttcccttatgaatgagcagctt
ccgatagagagtcagtttgtttctaaactagcagatcagttgaatgcggaaattgttctt
ggaactgttcagaatgcaagagaggcatgcacatggattgggtacacgtacctgtacatt
cgtatgcttcgaaatcctgtactgtatggaatggctgctgatgtattggagaatgaccaa
acattggaagaacggagagcagacctgatccattcggctgcaacgatattggataagaat
aacttggttaaatatgatagaaagagtgggtatttccaggtcactgatcttggtcggatt
gctagctattattatattacccatgaaacaatagctacatacaatgagcatttgaagcca
acgatgggggaaattgagctttaccgtttgttctcattgagtgatgaattcaaatatgtt
actgtgaggcaagatgagaaaatggaacttgctaagctcctagatcgtgtgcccattcct
gtcaaggaaagcttagaagagcccagtgcaaaaataaatgtcctgcttcaggtgtatatt
tcacggcttaagctggaagggctttctctatcgtcagatatggtgtacatcacacagagt
gcaggacgccttctgcgtgcactttttgaaattgttttaaagagaggatgggccttgctt
actgaaaaggctttaaatttgtgcaagatggtgactaggcgcatgtggagtgtccagtcc
ccattacgacagttcagaggaatcccaaatgaattgttaatgaagcttgagaagaaggac
ttggcttgggacaggtactatgacctttcacctcaggagattggagagcttataagattt
cctcaaatggggaagaaacttcacaaatatgttcatcaatttccaaagctgaatcttgct
gcccatgtgcaaccaataacacgaactgttctcaaagtggaactcactataactcccgat
tttcagtgggatgaggcagttcatggatacgttgagcccttctgggttattgttgaggat
aatgatggagaacacatccttcatcatgagtatttcatactgaagatgcagtacattgat
gaggatcatactctaaattttactgtgccaatttatgagccgttgcctccacaatacttt
gttcgtgttgtctctgataagtggctaggttctcagtctgtattgccggtttcttttagg
cacttgattttgccggagaaatatcctcctccaactgaactgttggacttgcagcctttg
cctgtgactgcactgagaaatccttcatatgaatctttatatcaggaatttaagcatttt
aatcctattcagactcaggtcttcacagtcctatacaacagtgatgacaatgtcttggtt
gctgcaccaacaggcagtggtaaaaccatctgtgctgagtttgctttgttgaggaatcat
cagaaaagttcggagaatgttatgcgggctgtgtatgttgctcctattgaagctcttgcc
agggaaagatacagggactgggaaaagaagttcggtaagggtttgggagtacgagtggtg
gaattgactggtgagacgactagtgatcttaagcttcttgagaaggggcaaatcattatc
agtactcctgaaaaatgggatgctctttcacggcgctggaagcaaaggaagcatgttcaa
caggttagccttttcatcattgatgagcttcatctgattggtggccatggaggtccagtt
ttggaggtcattgtctctaggatgaggtatatttcaagtcaagtggaaaataagatacga
atagtggctctttcaacttctcttgcaaatgctaaagatcttggggagtggattggtgct
tcttcccatggcctattcaattttccacctggtgtacgtcctgtgcctttagaaattcac
attcaaggtgtggatatagcaaattttgaagcgaggatgcaagcaatgacaaagccaaca
tttactgctgttgttcagcatgcaaagaatgggaaacctgctcttgtgtttgtccccaca
agaaagcatgcccggcttactgcacttgacttggtaacttatgcaactgctgatggtgga
gaaagaccctcttttcttctacattctaaagaagaattgtccccatttctgtccaggatt
ggagaacctactcttattgatactctccattatggtgttggctatatacatgaaggatta
tctagtcttgaagttgaagttgtatcgcagctgtttgctgctggttggattcaggtctgt
gttgcaagcagctcaatgtgctggggaatgtctttgtctgctcacttagttgtggtaatg
ggtacacaatactatgatggcagagaaaatgctcacacagattacccaataacagatctc
ttacagatgatgggccgtgcaagtaggccattgcaagacaatgcagggaaatgtgtaatc
ttgtgtcatgctcctcggaaagaatattacaaaaagtttgtttttgaggcattccctgtg
gaaagtcatctgcagcactttcttcatgacaatctaaatgcagaagttgttgtcggtacc
attgagagcaaacaagatgctgtggactatcttacctggactttcatgtatcgtagactt
gctcaaaatccaaactactacaatctacagggagtcagtcacaggcatctttcagatcat
ctttctgagcttgtagagaatactttaagtgatttggaagcaagcaagtgtgtagccata
gaggatgacatgtatctgtctcctctcaatttggggatgattgcatcctattattacatc
agctacacaactatagagcgtttcagctcatcattgactccaaagacaaggatgaaaggt
ctccttgaaattttatcttctgcttcagagtattcacaacttccaatcaggccaggcgag
gaagagttgataagaaaattgattaaccaccaaaagttgccagtggagaaaccaaaatat
aatgatccacatgttaaagcaaatgcattgttgcaggctcacttctccaggcatactgtt
attggaaatcttgctgctgataaacgcgaagtggttctttcagcaggccggctactgcag
gcaatggttgatgtcatttcaagtaatggatggttcaagctcgcaatttctgcaatggag
ctgagtcaaatggtgactcagggtatgtgggcagacgatcctgtccttttgcagcttcca
cacttcaccaaggagcttgcacgtaaatgtgaaaatgagagaaaaatcgactctgtgttt
gctcttgtggaaatggaggatgatgagaggcgtgaactgctgcagatgtcggactcacag
ttgctggatattgctcgattttgcaaccggtatcctaatattgatataaatctcgaggtg
ctagagagagatgatattagggtaggagaaaacataaccctgcaagtcacccttgaaaga
gaccttgagggacggacagaagttggtccagttgatgcacctaggtatcccaaagccaaa
gaagaagggtggtggcttgtggtaggcgatctaaagagcaatcaactgcttgccatcaag
agggtgtcattgcagcgaaagtcaaaggtcaagttggatttttctgcaccatcggaggta
ggaaggagggagtactggttatatttcatgtgcgactcctacatgggttgtgatcaggaa
tatgcgtttgaagttgacgtcaaggaaatgatggaaggatag
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integrated database retrieval system
