Nymphaea colorata (blue-petal water lily): 116246730
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Entry
116246730 CDS
T07418
Name
(RefSeq) replication factor C subunit 3 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030
DNA replication
ncol03410
Base excision repair
ncol03420
Nucleotide excision repair
ncol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116246730
03410 Base excision repair
116246730
03420 Nucleotide excision repair
116246730
03430 Mismatch repair
116246730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncol03032
]
116246730
03036 Chromosome and associated proteins [BR:
ncol03036
]
116246730
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116246730
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116246730
DNA Replication Termination Factors
ELG1-RFC complex
116246730
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116246730
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116246730
Check point factors
HRAD17(Rad24)-RFC complex
116246730
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA
Rad17
Sigma54_activ_2
Mg_chelatase
DUF815
ABC_tran
AAA_5
RuvB_N
AAA_lid_RFC1
AAA_22
nSTAND6
RsgA_GTPase
nSTAND3
AAA_29
AAA_2
AAA_23
AAA_16
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
116246730
NCBI-ProteinID:
XP_031474425
LinkDB
All DBs
Position
2:13707265..13715112
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKTLDKMTVHEDIAKNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFG
PGAEKVKLENKIWKIETGSRTIDLEITTLSSTHHVEMTPSDVGFQDRYIVQEVIKEMAKS
RPIETKGKKGFKVLVLNEVDKLSKEAQHSLRRTMEKYSASCRLILCCNSASKVTEAVRSR
CLNIRVNAPSIEQIAGVLEFIGKKEGLQLPVGFAMRVAAHSNRSLRRAILSFETCRVQQY
PFTENQVVQTMDWEQYVSEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPEVILKRLLYE
LMKKLDSELKHEICHWAAYYEHKMQLGQKAIFHIEAFVAKFMSIYKQFLIATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggtggacaagtacagaccgaagactctggacaagatgacggtccacgaggac
atcgctaagaacctcaagaaattggtttcggagcatgattgcccacatctccttttttat
ggaccttctggttctgggaagaaaaccctaatcatggctctccttagacaaatgttcggt
cctggagctgagaaggtgaaattggagaacaagatatggaagatagagactggaagcaga
accattgatctagagataactacattatccagtacccaccatgtggaaatgaccccaagt
gatgtgggcttccaggacaggtacattgtccaagaggtcatcaaggagatggccaagagc
agacccattgaaacaaaagggaaaaaggggtttaaagttctcgtgctcaacgaagttgat
aaattatctaaagaagctcaacattcattgcggagaaccatggagaaatacagtgcatcc
tgtcggttgatattgtgctgcaacagtgcttctaaagtgactgaagcggttcgatctcgg
tgcctaaatatacgggttaatgccccatccatagagcagattgctggggttctggagttc
attggaaagaaagaaggcttgcaactacctgtaggatttgccatgcgagtagccgctcat
tcaaatcggagtctgcgaagagcaatattatcttttgagacttgccgagtgcaacagtat
ccttttacggaaaatcaagtagtgcagactatggactgggagcagtatgtttctgagata
gcttctgatatagtgaacgagcagagtcctaaacgactctttttagttcgagggaaattg
tatgaactgcttgtgaattgtattcctcctgaggttattttgaagagattgttgtatgaa
ctgatgaagaaattggattctgaactgaagcatgagatttgccattgggctgcgtattat
gagcacaagatgcagcttggacagaaggccatatttcacattgaagctttcgtggcgaag
tttatgagcatatacaagcagttcctaattgcaacatttggctga
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