Nymphaea colorata (blue-petal water lily): 116246742
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Entry
116246742 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116246742
KO
K24738
rabconnectin-3b
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
116246742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncol04131
]
116246742
Membrane trafficking [BR:
ncol04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
116246742
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
ASA1
PAC11
WD40_Gbeta
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
116246742
NCBI-ProteinID:
XP_031474451
LinkDB
All DBs
Position
2:24886886..24904287
Genome browser
AA seq
1533 aa
AA seq
DB search
MKCDSVQCLWSPSPPSHNITATAVLERSRSIYTGGSDGSIIWWRVYSSPASPVPRMDVKP
MTMLCGHSARIADLDICIPIADNAKTDGACKRKTMSAGSEALISVCVDGVLCIWSGESGH
CRRRRKLPSWTGSPFAMSSLYKSRRYVCIGCMSAETMHLSSYHSVETDEGGIGRSTSEGF
TVEREVNCSPILKGTVVIIDACTLNIIHTVIHGFLSIGPVQAMVVAPSEEKEKQLVIMAD
GLGRFQSLSVPLDHWTDPEDGISVDNTSSSGMEQHAFPKIDNGINGVSIAPHGKVIALIF
SRQCMFRSTTSGLNIGEIYLGCSSLCDEDSSSLAYLTGGMFFSDDKPDFDITVDGKLDEG
FADKFVVWNNRGAAMMYHISYSFRAFNFECLCEVPAASYPAELRFHASFCQLNQYTVRTA
SICFDFEQSLLWTSQISIWSPCRLSVDETSIASHASTLVGEGGLWEDWYHSSDAYEKYFV
RHSEDSGGMPEVMTINDNEIKIEQLSDYTRVIHMKKGEMVTSSMVLSDVPIAPYAVVDGF
YNGQIKVTLFDNYLKELRCSSRFIKYGTNTDVPQAQSTLLGHTGAILCLAFHRMSTPTEQ
NFEQVLISGSMDCTVRLWNLDTGTPISVFHHHIGPVRQIILPPSRTYRPWSDCFMSVGDD
GCVALISLDTLCVERMFPGHPDCPKMVAWDSARGYIASLIMKNSLQSKRQEFLYIWDVKT
GARERIIRGPASHAMLDNFSRGVGVGSNCRDHFDSMTSASSLFLNMIDDRTFSVNHRDSA
APEESREPILSESNGSLVHDFREKLTLSKMLSTLSQVPLGNKCTPSVKHPLIQPVLWENE
KLVKSSCPCPGVAALVFDLHNLMSPRQGSGIIKESDDKLPLNACKIEAESQSQDVYAETS
SEVKNSLPHILDRYVGTGTMERFLLRFSIAFLHLWGIDALLDQSLVDEMDIYRPEQFLVA
PGLCGDKGSLTLVFPGRRTTLEFWKASSEFVAMRSLIMVSLAQRMLSLSHPTSDASSALA
AFYTRNFAERVPDIKPPLLQLLASFWQDQSEHVRMAARSLFHCAASRAIPVPLCGQKASL
NLSDINFVLDEGEESGTSVDEATSTVGLNMDGSLATQYDQTEDPSVLAWLESYELHGWVS
IIGGTNQDARASHIIVAAALAVWYPSLVKSSLAASVVHQLVKLVMVVSEKYSATAAELLA
EGMDTTWKPCIGSELSRLIGDLFFLIECLSGTATATVQNPVVAVNIRDTLIGILLPSLAM
ADIVSFLSAIEGQTWATSSDSPVHVVSLMTLIRVVRGAPKLMSPLLDKVVNFILLTMDLG
NSVMRQSCLHSSMAALKEVARVFPMVALNQGATRLAVGDLIGDVRKLTIEIYDLQNVTKI
KVLDASGPPGLPSLLGSDSDKTITAGISVLSFSPDGEGLVAFSEHGLMIRWWSLGAAWWE
KLTRNTVPVQCTKLILIPPWEAFSPNSSRSSIMASIHGLYSPRHLQDKTRGAADVDCLKA
LAQSIDLSYRLEWEGDRKVVLFRHGQSLGSFQL
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcgactccgtgcagtgcttgtggtctccttctccgcccagccacaacatcacg
gcgacggctgttttggaacggagccggtctatatataccggcggatcggatggctccatc
atctggtggagggtctactcctctcctgcgagtccagttcctaggatggatgtgaaaccc
atgacaatgctatgtggtcactctgcaaggatagctgatctggatatctgtattcctatt
gcagacaatgcaaagactgatggtgcatgtaagagaaaaactatgtcagctggttctgaa
gcattgatcagtgtttgtgttgatggagttttatgcatttggagtggtgagagtggacat
tgccgacgtagaagaaaattaccctcatggactggaagtccgtttgccatgtcatccttg
tacaaatccagacggtatgtttgcattggttgcatgtctgctgagacaatgcatttatca
agctatcattcagttgagactgatgagggaggcattggacgtagtaccagtgaagggttc
acagtggaacgagaagtgaattgtagtcctattttaaagggcactgttgtgattattgat
gcatgtactcttaatattatacatactgtaattcatggatttttatctattggccctgtg
caagcaatggttgtggcaccatcggaagagaaagaaaaacagctggtaattatggcggat
gggcttggaagattccaatcactttcagtaccattggatcattggacagatccagaagat
ggaataagtgttgacaatacttcttcctctggcatggagcagcatgcattcccaaaaatt
gataatgggataaatggagtatctattgcaccccatggaaaggttattgctttaattttt
agtagacagtgcatgtttaggtcaacaaccagtgggctcaatattggcgaaatatacttg
gggtgcagttccctttgtgatgaagattcttctagtttagcatatctcactggagggatg
ttcttctcagatgataagcctgactttgatataacagtagatgggaaattagatgaaggt
tttgcagacaagtttgtggtctggaacaatcgaggtgcggcaatgatgtatcacatatca
tattcctttcgagccttcaattttgagtgtttatgtgaagtacctgcggcttcttatcca
gctgaactaagattccatgctagcttctgccaactgaatcaatatacagttcgtactgca
tcaatatgctttgattttgagcaatctttgttatggacatctcaaataagtatatggtct
ccatgtcgactgtctgtagatgaaacctccattgcctctcatgctagcactttggtcggg
gaaggtggtttatgggaggattggtatcatagctcagatgcatatgaaaaatattttgtt
cgacacagtgaagatagtggtggaatgccagaagtaatgaccatcaatgataatgagata
aagattgaacagctaagtgattatacaagagttattcacatgaagaaaggagagatggtt
acatcttcaatggtactctcagatgtcccaattgcaccatatgctgtagttgatggattt
tataatgggcagatcaaagtaacactttttgacaactaccttaaggaactaagatgttcc
agtaggtttataaagtatggaaccaacacggatgtacctcaagctcaaagtactctttta
ggccatacaggtgctatactttgtctggcatttcatcgtatgtcaacacccacagaacaa
aattttgagcaagtgttgatatcaggtagcatggattgtacagtacgtttatggaatttg
gataccggcactccaatctcagtgtttcaccatcatataggtcctgtaaggcaaattatt
cttcctccatctcggacttatcgcccttggagtgattgctttatgtctgttggagatgat
ggatgtgttgcactcatctcccttgatacactatgtgtggagagaatgtttcctggacat
cctgactgtccaaagatggttgcatgggatagtgctaggggctacattgcgagcctaatc
atgaagaattcactgcaatctaagcgacaggaatttttgtacatctgggacgttaagact
ggtgctagagaacggattatcaggggccctgcttcacatgcaatgcttgataatttcagt
aggggggttggcgtaggttccaattgtagggatcattttgatagtatgacctcagcatct
tcattgtttctcaatatgattgatgatagaactttttctgttaatcatagggacagtgct
gcaccagaagaaagtagagaacctatcctgtcggagtccaatggttctctagtacatgat
tttagagaaaagttgaccttgtcaaaaatgctaagcacactcagccaagtcccacttgga
aataaatgtactccttctgttaaacacccattaattcaaccagttctttgggaaaatgag
aaactagttaagtcctcatgtccatgtcctggtgttgctgctttggtatttgatcttcat
aatcttatgtctcctaggcaaggaagtggtattattaaagaaagtgacgacaagctgcca
ctgaatgcttgcaaaattgaagcagaaagccaaagccaagatgtttatgcagaaacttca
tctgaagtgaaaaacagtttgcctcacatattagacagatatgtcggcacagggactatg
gaaagattcttgcttcggttcagcatagcctttcttcatttgtggggtatagatgcactg
cttgatcagtcgctggtagatgaaatggacatttacaggccagaacagtttctggtagcc
cctggactttgtggggataagggttcactgactctagtctttcctggtcgacggacaact
ctagagttttggaaggcttcctcagagtttgttgcaatgagatctctgataatggtctcc
cttgctcagcgtatgttgagcttatctcatccaacttcagatgctagcagtgctttggca
gcattttacactcgtaattttgcagagagagttccagatataaagccacctttgcttcag
ctcttggcaagtttttggcaagaccaatctgagcatgtacgcatggctgcccgttctttg
tttcattgtgctgcctcacgggcaattccagttccactttgtggtcagaaagcttctctg
aatttgagcgatatcaactttgtgcttgacgaaggtgaagaatcaggtactagtgtagat
gaagcaacttcaactgttggcttgaatatggatggaagcttggcaacacaatatgatcaa
acagaggatccttcagtgcttgcatggcttgaatcctatgaactccatggttgggtttct
ataattggtggtacaaaccaagatgcaagggcgtcacacattatagttgctgcagcacta
gctgtctggtatcctagtctagtgaaatcaagtcttgctgcatcagttgttcatcaactt
gtgaaactagtgatggttgtaagtgaaaaatatagtgcaactgcagcagagctcctagca
gagggaatggatactacatggaaaccatgcattggttctgaactatctcgtttgattggg
gacttattttttctgattgagtgcttaagtgggacagctactgcaactgtgcaaaatcca
gttgtagctgtaaatattcgtgataccttaattggtatccttcttccaagcttagcgatg
gctgacatcgtgagttttcttagtgcaattgaaggccagacttgggccacttcctccgat
tcacctgtccatgtcgtctcacttatgactctgataagagtagttcgtggtgctccaaag
ctcatgtccccactgcttgataaggttgtgaattttattctgcttacgatggaccttggg
aactctgtcatgcggcaatcttgccttcatagctctatggcagctcttaaagaagtggca
cgtgtttttccaatggttgctctgaatcaaggagcaacaaggcttgcagttggagattta
attggagatgtccgtaaactcaccatcgaaatatatgacttgcaaaacgttacaaaaata
aaggttctggatgcaagtggaccaccaggacttccaagtttacttggcagtgattcagac
aaaacaatcacagcagggatctctgtgctgagtttttcacctgatggtgagggattggtt
gctttctctgagcatggactgatgattaggtggtggtccttgggagctgcatggtgggag
aagctaactagaaatactgttcctgtacaatgtacaaagctcattctgattcctccatgg
gaggcattttctcctaattcttctcggtcaagcataatggctagcattcatggactctat
agcccacgtcatctacaggacaaaacaaggggagctgccgatgttgactgtttaaaggct
ctggctcaaagtattgatctttcttatcggctggagtgggagggtgatagaaaagtcgta
ctcttccggcatggtcaatcattaggctctttccagctctga
DBGET
integrated database retrieval system
