Nymphaea colorata (blue-petal water lily): 116246918
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Entry
116246918 CDS
T07418
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116246918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116246918
03012 Translation factors [BR:
ncol03012
]
116246918
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116246918
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116246918
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116246918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
nSTAND3
AAA_19
ATPase
AAA_16
Dicer_dimer
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
116246918
NCBI-ProteinID:
XP_031474698
LinkDB
All DBs
Position
2:4465748..4488024
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AA seq
1207 aa
AA seq
DB search
MRFPYQCYRHYHWSRNRFSLVDLLVHYPHHFSFPPPPPSSNMRDYPLRQDAHSSYAAPAV
PRLRSVITAPTFSSSSSSSASIPARSWDFDSKGRDSYLIPSNPTFPSLHPSSSYGRLAFE
EGSEEDSDREPDFNKDSSSTLENIDDWKWKLNMLIRNHDEQEVVSRDRKDRRDYDQIAAL
ANRMGLHSRQYSRIVVVSKFPLPNYRPDLDDKRPQREVIIPTILQRKVDNLLDNFFAQKP
RSLLGLPDAAVPNSNGHISPDGSDDGLFDESESQMPTSAILEKILRRRSLQLHEQQQAWQ
ESPEGQKMLQFRRSLPAYKERDTLLKAIMQNQVIIVSGETGCGKTTQLPQYILESEIDAG
RGATCSIVCTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGVL
LRRLLIDPKLKGVTYVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATINAELFL
SYFGKPPLLHIPGFTHPVRTHFLENILEVTGYRLTPYNQIDDYGQDKMWKMQKQALRKRK
SQIATLVEDALETADFKKYSPRTHESLSCWNSDSIGFNLIENVLCHICRNERPGAVLVFM
TGWDDINALKEQLHSHPLLGDPSKVLLLACHGSMASSEQRLIFDKPEGSIRKIVLATNMA
ETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHL
YPRCVYDAFAEYQLPELLRTPLQSLCLQIKTLRLGSASEFLSKALQPPELLSVQNAIEYL
KIIGALDEKENLTMLGRHLSMLPVEPKLGKMLILGAMFNCLDPILTVVAGLSVRDPFLTP
FDKKELAESAKLQFSAKDYSDHLALIRAYAGWKKADAEGTGYDYCWKNFLSAQTMRAMDS
LRKQFLSLLKDAGLVGDGADFCNMWSCDEYLIRSVICAGLYPGVCSAVNKEKSISLKTME
DGHVLLYSNSVNGREQRIPYPWLVFNEKVKVNSVFLRDSTAVSDSILLLFGGNISRGGLD
GHLKMXGGYLEFFMKPNLAEMYICIKRELDELIQKKLVTPKMDLRGYESLFAAVRLLVSE
DLCQGRFVFGREILKPKTFGASLFQKPGCGPGGDNSKSQLQTLVVRAGYDAPTYQTKQLK
NNQFRAIVEFSGMQFVGNPCQNKKLAEKDAASEALKWLTGSSSTSHEEIENMSLLLKKSK
KQQQPRR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttcccctatcaatgctaccgccattaccattggtccagaaaccgtttctctctt
gttgatctcttggtccactatccccaccatttctctttcccgccgcccccgccgtcgtcc
aatatgagggactatccgcttcgccaggatgcccactcctcctatgccgcgcccgccgtc
cctcgtcttcgtagcgtcatcactgctcccaccttctcctcgtcgtcgtcctcttccgcc
agcatacccgcgcgctcctgggatttcgattccaaggggagagacagctatctcatcccc
tccaaccccacttttccttcgctgcaccctagctccagctatggccgtctggcctttgag
gagggttccgaggaggattccgaccgcgagccggactttaacaaggattcatcatcgact
cttgagaacattgatgactggaagtggaaactgaatatgcttatccgcaaccatgatgag
caagaagtagtgtccagagatagaaaagataggcgagactatgaccagatagcagccttg
gctaacagaatgggtttacacagccggcagtattcaaggattgtggttgtcagtaaattt
ccattaccaaattacaggcctgatctcgatgataaacgaccacaacgagaggttataatt
cctaccattttgcaaaggaaggtggacaatctactggataatttttttgctcaaaagcct
agaagtcttttgggtttgcctgatgctgcagttccaaattcgaatggccatattagccca
gatggaagtgatgatggtctttttgatgaaagtgaatctcagatgcccactagtgcaatc
ttggaaaaaattctgaggaggaggagtcttcaacttcatgaacaacaacaagcttggcag
gaatctcctgagggccagaagatgcttcagtttagaagaagtcttcctgcatacaaggaa
agagatactttattaaaagctattatgcagaatcaggttatcattgtttctggtgaaact
ggttgtggtaagactacacaacttccacaatacattttagagtctgagatagatgctggc
cgtggagcaacatgcagcattgtttgtacccagccgagacgtatttctgctatggctgtt
tctgaaagggttgctgctgagagaggcgagaagttgggtgaatctgttggttataaggtt
cgtttggagggtgtcaaagggcgggatactcgtttacttttctgcactactggtgtactt
ttaaggagattacttattgacccaaaactcaaaggtgtaacttacgttattgttgatgaa
atccatgaacgtgggatgaacgaagattttctgcttattgtcttgaaagaattactgccc
cgcagacctgaactgcggttgattttgatgagtgcaactatcaatgccgaacttttcttg
tcctactttggcaagcctccactgttacatatccctggattcactcatccagttcgcacc
cattttttggagaacattcttgaagttactgggtaccgtttgaccccatataatcaaata
gatgattatggacaagataagatgtggaaaatgcaaaagcaagctcttcggaaaaggaag
agtcaaatagctactcttgttgaggatgcactggagaccgctgacttcaagaaatacagt
ccaagaacccacgagtccttatcatgttggaattctgattctataggttttaacctcatc
gaaaatgtgctgtgccatatttgtagaaatgaaaggcctggtgctgttctggtatttatg
actggatgggatgacattaatgctctcaaagagcagcttcattctcaccctcttctggga
gatcccagtaaagtgctattgctagcatgccatggatccatggctagctcggagcagagg
ttaatttttgacaaaccagaaggtagcattagaaaaatagttcttgctactaatatggct
gagaccagcattacaatcaatgatgtggtttttgttgtcgactgtgggaaggcaaaagag
acatcttatgatgcattgaataatactccatgtttgcttccgtcttggatatcaaaggct
tctgctcgtcagaggagaggtcgagctggccgggttcagcctggagaatgttatcatctt
tatccacgttgtgtgtatgatgcttttgcggagtaccagttgccagagctgttgaggaca
ccgttgcagtcactgtgccttcaaattaaaactctacggcttggtagtgcttcagagttc
ctttcaaaggccctacagccaccagaactgctctcggttcaaaatgctatcgagtacttg
aaaatcattggagctttggatgagaaggaaaatttgaccatgcttggacgccacttatca
atgcttccagttgaacctaaactcgggaagatgctcattttaggggcaatgttcaactgc
ttagatcctattttgactgttgtagcaggcttaagtgttcgagatccttttctaacacct
tttgataagaaggagcttgcagagtctgcaaaattacagttttctgcgaaggattacagt
gatcatcttgcacttatccgagcatatgctggttggaaaaaagctgatgcagaaggtact
ggttatgattactgctggaagaactttctttctgcccaaacaatgagagccatggattct
cttcggaagcaattcctctctctcctcaaggatgcaggtcttgttggtgatggtgctgat
ttctgcaatatgtggagttgtgatgaatatctcattcgctccgtcatatgtgctgggcta
tatcctggagtttgttctgctgtgaacaaggaaaagtcgatttctctgaagacaatggag
gatggtcatgtcctgctttactctaattcagttaacggccgtgaacagagaattccttac
ccatggctcgttttcaatgagaaagtaaaagtgaattcagtgttcctccgagattcaaca
gcagtctctgattctattcttctactctttggtggaaacatttcccgaggcggacttgat
ggacatttgaaaatgnctgggggatacttggagttcttcatgaagccgaacttagcagaa
atgtatatttgcatcaaaagggagcttgatgaactaattcagaagaaacttgtgactcca
aaaatggaccttcgtggctatgagagtctctttgctgctgtgaggttactggtttctgaa
gatttatgtcaaggtaggtttgtttttggacgggagattttgaagcctaaaacatttggg
gcttcactgttccaaaagccaggttgtggtcctgggggtgataattcaaagagccagttg
caaacgctggttgtaagagcaggatacgatgctccaacttatcagacaaagcaattgaaa
aacaaccaattcagagctatagttgagtttagtggcatgcagtttgtcggaaatccatgt
cagaacaaaaaacttgcagagaaggatgcggctagtgaggcattgaagtggttgaccggc
agttcatccacaagccatgaagaaattgaaaatatgtccttgctattgaaaaagagcaag
aagcagcagcaaccgagaagatga
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