Nymphaea colorata (blue-petal water lily): 116247007
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Entry
116247007 CDS
T07418
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116247007
03015 mRNA surveillance pathway
116247007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116247007
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116247007
mRNA cycle factors
P-body specific factors
116247007
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
116247007
NCBI-ProteinID:
XP_031474842
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All DBs
Position
1:2410396..2422305
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AA seq
576 aa
AA seq
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MKDPLDRTKVVLRHLPPSISQAVLMEQVDARFAGRYRWTAFRPGKTSHKNMRYARAYIDF
KRPEDVLEFAEFFDGHVFVNEKGSQFKTIVEYAPSQRVPKSWSKKDGREGTIHKDSEYLE
FLEMLAKPVENLPSAEIQLERREAERASAPKETIVITPLMEFVRQKRATKNGSQRTPSGK
LSRRTSASAAASGSASHKRGPEKRKISASMYVLRDNTKVSAGKTSYTIVARKDEKKTSDD
SGTVPVLGSEVLEDESGASGHAETGKKKVILLKGKEREVTSTSPVKNSSGPSSFKQNHRR
EISGKLIRSILSNKEAQQNQPQPASIQVEQQLQASPIEKDKRPPRPVRTVSKDSAHASSA
SLSQSDNRRISDEKVIGNDPHGLSPASDKPDRRTRNKDRPDRGVWAPLRRSDALQAVDES
SSFPGRSSAEAVDSTQVAKPMVSNKRGDDGLETRDVITDNQSAITVKSRNQGTSNHHGRS
GRGLSLSPDFPLNHGEAKVDTASTRGGEAKSQGFGRNSVATAENGSHRYGRRVSATGSRE
VDNLPSTVDGKSSKRGSPGYGAHEKQVWVQKSGSGS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccccttggatcgcacgaaggtggtgctgaggcatctgccgccatcgatctcg
caggccgtccttatggagcaagtcgacgcccgcttcgccggacggtaccggtggaccgct
ttccggcctgggaaaacgagccataagaacatgcgctatgctcgagcttatatagatttc
aaaaggcctgaggatgttctcgagtttgctgagttctttgatggtcatgtttttgtcaat
gagaaaggttctcaatttaagaccattgtcgaatatgcaccttcacaacgtgtcccaaag
tcgtggtcgaagaaggatggtcgtgaagggaccattcacaaagactccgaatatttggag
tttctggaaatgcttgctaagccagtggagaatcttccaagtgcagagatacaattggaa
agaagagaagcagaacgtgcaagtgcaccaaaggaaacaatcgttattactcccctcatg
gagtttgttcggcagaaaagagctactaaaaatgggtctcagaggacaccttctgggaag
cttagccggcgaactagtgcttctgctgctgcttctggatctgcttctcataagagaggg
cctgagaaacgaaaaatctctgcttctatgtatgttttgagggacaatacaaaggtttca
gctggcaaaacaagttatacaatagtagcaagaaaagatgagaagaagacttcagacgac
tcgggtactgttccagtgcttggatctgaagtattggaagacgaaagtggtgcatctggg
catgcagaaactgggaaaaagaaagttatacttttgaaggggaaagagagagaggtaact
tcaacatctccagtaaaaaattcatctggaccatcctctttcaaacagaatcataggcgt
gagattagtggaaagctaatcagaagtattctttcaaataaggaagcacagcaaaatcaa
ccacaacctgcatctatccaggttgagcagcagttacaggcatcaccgatagagaaggac
aaacgtccaccgcggccagttcgtactgtttcaaaggattctgcccatgcatcatctgct
tctctgtcacaatctgataacagaaggatatcagatgagaaagttattggtaatgatcca
catggtctatcaccagccagtgataagccagacagaaggactagaaacaaggatagacct
gatcggggagtatgggccccacttcggcgttctgatgcattacaggcagttgatgagtca
tcttcttttcctggtcgatcatcagctgaggctgtagatagtacacaggtggccaagcca
atggtttctaataaacgtggggacgatggactggaaactcgagacgtcataactgataat
cagtctgccatcacagtcaaatctcgaaaccagggtacatcaaatcatcatggtcggtct
ggacgtggtttgtcactgtctcctgattttccattgaatcatggtgaagctaaagttgat
acagcaagcacaaggggtggggaagctaaatctcaagggtttggacgcaatagcgttgca
actgctgagaatggctctcataggtatggtcgtcgggtctcagcaacaggttcaagagaa
gttgacaacttgccaagtacagttgatggtaaatcttcaaagaggggttctcctggatat
ggtgcacatgagaagcaagtctgggttcagaagtctggatcgggttcctga
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