KEGG   Nymphaea colorata (blue-petal water lily): 116247146
Entry
116247146         CDS       T07418                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018  RNA degradation
ncol03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116247146
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116247146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncol03019]
    116247146
   03041 Spliceosome [BR:ncol03041]
    116247146
Messenger RNA biogenesis [BR:ncol03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116247146
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116247146
Spliceosome [BR:ncol03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116247146
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 116247146
NCBI-ProteinID: XP_031474997
LinkDB
Position
2:complement(14792071..14794644)
AA seq 98 aa
MSGGPGLESLVDQAISVITNDGRNIVGILKGYDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaggtggtcctggtctcgagtcccttgtagatcaagcaatatctgtcataacaaat
gatggacgcaacatagtgggaattctaaaagggtatgatcaggccacaaatatcattctg
gatgagtcccatgagagggtctactctactaaggaaggcgttcaacaactggtgttgggg
ttgtacataataagaggagataacataagtgttgttggggaattggatgaagagcttgat
tcgaatttggacctctcaaaactgagagcacatccactcaagcctgtgattcattga

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