Nymphaea colorata (blue-petal water lily): 116247249
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Entry
116247249 CDS
T07418
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116247249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116247249
03009 Ribosome biogenesis [BR:
ncol03009
]
116247249
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116247249
Spliceosome [BR:
ncol03041
]
Complex A
U1 snRNP components
U1 related factors
116247249
Complex B
116247249
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
Pre-60S particles
Helicases
116247249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
116247249
NCBI-ProteinID:
XP_031475155
LinkDB
All DBs
Position
2:2042008..2051928
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AA seq
840 aa
AA seq
DB search
MATTSTGPRYAPEDPTLPKPWRGLVDGNTGYLYFWNPETNVTQYERPVTLAPPPPPPGPP
PPSTPKLASVSVSSSVHLQHSENPAHGKHGGSHGQQVEDPSSNYGQRHGSGHSTGMRSSD
GHHHHYDGNGDVGRGLQPKLAPIPSARAQQVARNDSGNLQNGPIPPVNGSHGQSYSSNQP
FRSSGRAHGSDPGNAVPADVYRRQHEITILGDNIPPPLTTFESTGFPSEILREVHNAGFT
SPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPGFIHLKQRHNNSRMGPTVLVLSPT
RELATQIQEEAVKFGRSSRISCACLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMKR
VSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAADLLIH
PVQVNIGNIDELVANKAITQYVEVVPPMEKQRRLEQILRSQEPGSKVIVFCSTKRMCDQL
VRSIARHFNAAAIHGDKSQGERDYVLSQFRSGKSPVLVATDVAARGLDIKDIRVVINYDF
PTGVEDYVHRIGRTGRAGATGLSYTFFSDQDAKYAGELVKVLEGANQKVPQELRNIALRS
VGLPKGRNRWDYGSGRAGGGGARGHGSRNDAYGGRGGRGLSSSGRSERAHGRDDGHGRGY
DRGHQDSWRGGGSDRDRVRGRSYSRSRSRSRSRSRSNPNRGKGWDWGFSYGDSPRRSRSK
GRSRSRSRSFSRSRSRSGDRCGNRGSSPAARRELDSPPAHLSISSPPRSRSPYHEEDVWK
PSPSRADNDVGKQSPNMVNDDSAGANGHTYSDYEEGMIEEAGELARSPRDVAVEDAAIRD
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacttcgactggtccacgatatgctcctgaagatccaactcttccaaaacca
tggagaggtttggtcgatgggaacactggttacctgtatttctggaaccctgaaacaaat
gtcactcagtatgaacgaccagttaccctagcccctcctcctcctccccctggacctcct
cctccatccactccaaagctagcatctgtatctgtcagctcatctgttcaccttcagcat
tccgaaaatccagctcatggaaaacatggtggatcccatgggcaacaggttgaagatcct
tcttccaattatgggcagcggcatggaagtggacattctactgggatgagatcaagtgac
ggtcaccaccaccattatgatggtaatggcgatgtgggacgtggcctgcaacctaagctt
gctccaattccttcagcaagggcacaacaggttgcaagaaatgacagtggcaacctgcaa
aatggtccaatacctcctgtgaatggttctcatggtcagtcatattcaagcaaccagcct
tttcgatcatctggaagagcacatggttcagatcctggaaatgcagtgcctgcagatgta
tataggagacaacatgaaatcacaatactgggtgataacattcctccaccgctcacaaca
ttcgagtctaccggttttccatcagagattctcagagaggtgcacaatgctggctttaca
tctcccacaccaattcaggcacagacttggccagttgctttacagaatcgtgatattgtt
gccattgcgaagacagggtctgggaagaccctgggttaccttatcccaggatttattcat
cttaaacaacgacacaacaattcacgtatgggcccaactgtcctggtcctgtcaccaaca
agagaacttgcaacgcagatacaagaagaagcggtgaagtttgggaggtcatctaggatt
tcttgtgcgtgtttgtacggtggagcccctaagggccctcagttgagggatcttgaccgt
ggagtagatgttgtagttgcaactccaggccgtctaaatgacattctggagatgaagcgc
gtcagcctccgtcaagtttcatatttggtgcttgatgaggcggatcggatgcttgacatg
ggttttgaacctcagatcaggaaaattgtgaacgagattcctccacgcagacaaactctc
atgtatacagcaacttggccaaaagaagttcgaaagattgctgctgatctacttatccac
cctgttcaggtcaatatagggaacattgacgagcttgttgcaaacaaagctattactcag
tatgtcgaagttgttccgcccatggagaaacagaggcggttggagcagatactacgttct
caggaacctggatcaaaagtgatcgtcttttgctctacaaaaaggatgtgtgatcagttg
gtacggtccatcgcccgccattttaatgctgctgctattcatggggacaagtctcaggga
gaaagagactatgttctaagtcagttccgatctggaaaatctcctgttctggtggccaca
gatgttgcagcacgaggacttgacataaaagacatcagggtggtgattaactatgacttt
cctactggtgtcgaagattatgtccatcgcattgggaggacgggaagggcaggtgcaact
ggtctctcttacacgtttttttctgatcaggatgcaaaatatgctggtgaactggtgaag
gttttggaaggtgcaaaccagaaggttccacaagaactgcgtaacatagctttacgcagt
gttggccttccaaaaggtcgtaatagatgggattatggcagtggtcgggctggtggtggt
ggtgcccgtgggcatggttccagaaatgatgcctatggaggtcgtggtggtcgtggacta
tcgtcttctggaagatcagaaagagcccatggcagggatgatggacatggtcgcggttat
gatcgtggccatcaagacagttggcgtggtggtggtagtgatagggacagggtgagaggc
cgtagttatagccggagcaggagtaggagcaggagccgtagtcgcagcaacccaaacagg
ggtaaaggatgggactggggcttcagttatggtgacagcccaaggaggagccggagcaag
ggccggagtagaagtagaagcaggagctttagccggagccgcagcaggagcggtgacagg
tgcggcaatcgtggaagctcccctgcggctagaagggagttggacagcccacctgcgcac
ctgtcaattagttcaccaccgcgcagcagatctccctaccatgaggaggatgtctggaag
ccgtcaccttctcgtgctgataatgacgtagggaagcagtctccaaatatggtgaacgac
gactccgctggtgcgaacggccacacatactccgactatgaggagggcatgatagaagaa
gccggtgagttggcccgatcgccgagggatgtggctgtggaagatgctgctattagggat
tga
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