Nymphaea colorata (blue-petal water lily): 116247253
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Entry
116247253 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116247253 isoform X1
KO
K06100
symplekin
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116247253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116247253
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116247253
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116247253
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116247253
U7-dependent histone pre-mRNA processing factors
116247253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
mTOR_dom
HEAT_EZ
HEAT_2
TPR_DNAAF5
CRM1_C
Motif
Other DBs
NCBI-GeneID:
116247253
NCBI-ProteinID:
XP_031475162
LinkDB
All DBs
Position
2:complement(15438812..15463356)
Genome browser
AA seq
1295 aa
AA seq
DB search
MVGVMAGSEARNKALNLLNAVKFPPDLPSKLENLGRLGEVIVSRDPSLLREFLPHVVEFQ
SDKASPVRKFIAEIIGEIGFKHMSFLPELVPVLISLLNDATPAVARQAVTSGAYLFQKTM
GYIAFRGLYSEELDNLLESSWTSITKLKEALYEVAFQSNFWLHVHKPGNDGARILAVRFV
KSTILLFTPDPNGSSQSPPQIDADEKNIEFNISWLRSGHPLLTTSDLALEASRNLGLLLD
MLRSPSLKTLSNSVIVVLINSLSDVAKKRPAFYGRILPVILGLDASVCTLNGSRISGVPN
ALKHAFLTCLKCSHPGAIPWRDRLIEALKAMDAGELADEALSQLDKLSSEVQPLQEAKGG
VELADLPITDHGKKRSVTQDTDFTATSDSLGKRIRQAPPMSQGQPTVSVETNLRAPEDFV
PNGIKDTSTDEVCGPVQQLVAMFGALVAQGDKATGSLEILIGSISSDLLAEVVIANMRHL
PPCRPNVEEEEETVSVGFISSLVSSTLDIKPSSNTLEIMTSVLGLRLPASCDSTVVHHIE
KSEVKEATYTTSVPVKIAGADMPVVSHSPSVTGNFNIQPMINDVGPSEASIPGLEGSAPV
VGSLENEQACYASTADSLGTHREDAASSGLSFANKVPSTATVSTDHSEALSPRESAADTS
WISSAASTNVAFSTSLSLNKTAPPTANLSEEQKDELQKLAYIRIINTYKSVAITGGSDVH
FSVLAYIGSEYPLELDAWGLLQKHILDDYLNHEGHELTLRVLYKLFVEAEQEHDFFASTT
ATSAYETFLLTVAESLRDSFPASDKSLSRLFGEAPYLPKPVFKLLECLCSPGNNEIYSKE
LKSGDRVTQGLSAVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIRLVANKLYPMSC
ISQTIEEFASEKLLSAVNDLQTTLLGDGNSSKNTDGQLAASDDVSEALVSEAQRCMSLYF
ALCTKKHSLLWQVFTVYRSASEAAKEAIRKQIPILVRTIGSSAELLSVISDLPAGSENLL
MLVLHTLTDGAIPSPDLICAVKRLYESKLKDVAILIPILSSMPKDEILPIFPKLVGLPLD
KFRAVLNCILKGPSPVLSPAEVLIAIHGIDPDKDGIALKKVTDACSACFERQADFTQQVL
AKVLNQLVEQIPLPLLFMRTVIQSIGACPSLVDFVMDILLRLVNKQIWKFPKLWVGFLKC
ALQTQPQSFGVLLQLPAAQLENALNRSPPLRVPLVAHASQPNICSSLPRSTLVVLGLASD
SQPTSQAQSVQQTSEHGNAGGTFATETTQESSAAG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atggtgggggtcatggcgggaagtgaagcgaggaataaggcgctcaacctcctcaacgcc
gtcaagttcccgcccgacctaccgtcgaagcttgagaatttggggcggctcggggaggtg
atcgtctccagggatccttctcttctccgggaattcttaccccacgtcgtcgagtttcag
tcagataaagcgagccccgtgaggaaattcatcgctgagattattggagaaattggattt
aagcatatgagctttttacctgaactggtccctgtcctaatatctttattgaacgatgca
acgcctgctgtagctcgacaggctgttactagtggagcatatctatttcagaagaccatg
ggatatattgcatttcggggtttatattcagaggaattagataacttacttgaatcatca
tggacttcgataacaaagctgaaggaggcattatatgaagttgcttttcagtctaatttt
tggttacatgttcacaagcctggaaatgatggtgcacggatactagctgtaaggtttgtc
aaatctactattctcctttttactccggatccaaatggcagttcgcagtcaccacctcag
atagatgctgatgaaaaaaatattgagttcaacatatcatggctgcgcagtggccatcca
ctgcttactacatcagatctagctcttgaagccagcaggaacttgggtctgttacttgat
atgcttaggtcaccatcactaaagacattaagtaactctgtcattgttgtactgatcaat
agtttgtcagatgttgcaaagaagaggccagcattttatgggcgtattctgccagttatt
cttggcctggatgcttcagtttgcacattaaatggatctcggatctctggtgtacccaat
gcattgaagcatgccttcttaacatgcctaaagtgtagccatccaggggctatcccgtgg
cgggatagacttatagaagctctgaaagccatggatgctggagagcttgcagatgaagct
ctttctcagctagataaactttctagtgaggtgcaaccattacaggaggcaaaaggtggc
gtagaattggctgacttgcctataactgatcatggcaagaaaagaagtgttacccaagat
accgacttcactgcaacttctgattcattgggaaaaagaatacgacaggctccacctatg
tcacaggggcaacccacagtgtcagtcgagacaaatctgagagctccagaagactttgta
cctaatgggattaaagatacaagcacagatgaagtttgtggccctgtgcagcagcttgtt
gctatgtttggtgctttggttgcccaaggtgataaagctactggttcgctagagatctta
attggaagcatttcttctgacctgctggctgaagtggtaattgctaatatgcgtcatctt
ccaccttgtcgtcctaatgttgaggaggaagaagaaactgtaagtgtaggattcatttcg
agccttgtcagcagtacacttgatatcaagccatcttcaaatacgttggaaatcatgaca
tccgttttgggcttaaggttacctgcatcttgtgacagcacagtggttcaccatattgaa
aaatctgaagtcaaggaagcaacatataccacctcagttccagttaaaattgcaggtgca
gacatgccagttgtgtctcattctccatctgtcactggcaattttaacattcaaccaatg
ataaatgatgttgggccttcagaagcttcaatccctggtttagaaggttcagctcctgtt
gttgggagtctggaaaatgagcaagcgtgttatgcttcaactgcagattcacttggaaca
catcgtgaggatgcagctagttccggtttatcatttgctaacaaagttccttcaactgct
actgtttcaactgatcattcggaggcacttagcccaagggaatctgcagcagatacaagc
tggatttcttctgcagcttcaactaatgtagcattctctacttcattgtcacttaataag
acagcacctccaactgctaacctatctgaagagcagaaggacgaattgcagaaattggca
tatatccgcataattaatacttacaaaagtgtagcgattacaggaggctcagatgtccac
ttctccgtcctggcatatattggtagcgagtatccattggagctagatgcatggggcctt
ctgcaaaaacatattttggatgactacctaaatcatgaggggcatgagttgacattgcgg
gtactatataagctttttgttgaggctgagcaggagcatgacttctttgcctcgactacc
gcaacctctgcctatgaaaccttccttttgactgtagctgaaagtctacgagattctttc
cctgcatcggacaaatctcttagcagactatttggtgaggcaccttatttgccaaaacca
gtatttaaattgttagaatgtctatgctctcctggaaataacgagatatacagcaaggaa
ttgaagtctggtgaccgagttactcaaggccttagtgctgtatggagtttaattttatta
cggcctccaattcgtgatgtttgcttgaagattgcattacagagtgctgttcatcattta
gaagaagtgagaatgaaggcaataagattggtggccaacaagttgtacccaatgtcctgc
atttcacaaaccatagaagaatttgccagtgagaagctgctttcagcagtaaatgatctt
caaactacactattgggagacggtaactcatctaagaatactgatgggcagttggctgca
tctgacgatgtatctgaagctttggtctccgaggcacaaagatgcatgtcactttacttt
gcgctatgcacgaagaagcactctctgctctggcaggtgttcactgtgtatagaagtgca
tcggaggctgcaaaggaggccattcgtaaacagattccaattctggtacggactattggt
tcttctgcagagttgctttctgtcatttcagaccttcctgcaggaagcgagaacctactt
atgctggttttgcatacgctgacggatggggcaatcccttcaccagacctgatatgtgct
gtcaaaaggttatatgagtcaaagctgaaggacgttgctattctcattccgatactgtca
tctatgccaaaggatgagattctaccaatatttcccaagctggttggtcttccacttgac
aagttccgagctgtactaaattgtatactaaaggggccttctcctgtcctttctccagct
gaagtcttaattgctatccatggaattgatccagataaagatggcatagccctgaaaaag
gtcacagatgcatgctctgcttgctttgagcgtcaggctgattttacccaacaagttctt
gctaaagttttaaatcagttggttgaacagattcctcttcctttattgttcatgcgcaca
gttatacagtccattggagcttgtccctctctggtggactttgtgatggatatccttttg
cgccttgtcaacaaacaaatttggaaattcccaaaattgtgggtgggcttcttgaaatgt
gcactccagacacagccacaatctttcggtgtgctacttcagttgccggctgcacaactt
gaaaatgccctgaaccggagccctcctcttagagtaccactggttgctcatgcaagccaa
ccgaatatctgttcatcacttcccaggtctaccttggtggttttggggctagcctccgat
tctcaacctacaagtcaggcacaatcagtccaacaaaccagtgagcatgggaatgctggt
ggaacatttgccactgaaacaactcaagagtcatctgctgctggctaa
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