Nymphaea colorata (blue-petal water lily): 116248034
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Entry
116248034 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116248034
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116248034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116248034
03041 Spliceosome [BR:
ncol03041
]
116248034
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116248034
Spliceosome [BR:
ncol03041
]
Complex B
Other components
Prp19-related factors
116248034
Complex C
116248034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
Mad3_BUB1_I
TPR_19
TPR_12
ARM_TT21_C
UTP6_C
TPR_15
ARM_TT21
PPR
AbiH
Motif
Other DBs
NCBI-GeneID:
116248034
NCBI-ProteinID:
XP_031476460
LinkDB
All DBs
Position
2:16186429..16196265
Genome browser
AA seq
928 aa
AA seq
DB search
MGGGGAEETVAGGGQEGEGQKEQQRDKLLYPDDKDLLYEEEIQRNPFTLKLWWRYLIAHA
ESPFRRRSVIYERALRALPGSYKLWHAYLLERLKQVKHLPVTHPRYESLNNTFERALVTM
HKMPVIWIMYLTSLTQQQYVTRTRHAFDRALRSLPVTQHDRIWDKYLTFVGQKGVPIETS
LRVYRRYLKFDPTHIEDFIDFLLRSGLWQEAAERLAGVLNDESFRSIQGKTRHQLWLELC
DLLTKHACEVSGLKVDAIIRGGIRQFTDEVGRLWTSLADYYIRRGMYEKARDIYEEGMRT
VITVRDFGMIFDSYTQYEESMLAAKMETLDIEEEGGEQFGGENGAGEKVDGEDGGAGGDR
TDLRGFWLSDENDIDLRLARLEHLMDRRPEIVSSVLLRQNPHNVHEWHKRVKLFKNNPER
QIMTFTEAVKTVDPMKAVGKPHTLWVAFAKLYENHKDLANARVVFERAVQVNYKALDDLA
SIWCEWAEMELRHKNFKGALGLLRRATAEPSVEVKRRVAADGNEPVQMRLHRSLKLWTFY
LDIEESLGNLDSTREVYERILDLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKY
PHVKDIWVTYLSKFVKRYGKSKLERARELFEQAVRTAPAEDVKPLYLQYAKLEEDFGLAK
SAMKVYDQATKAVPDHEKMKMYEIYIARAAEIFGVPKTRQIYEQAIESGLPDKDVKTMSM
KYADLEKSLGEIDRARGIYNFAAQFADPRSDTDFWNTWHEFEVQHGNEDTFREMLRVKRT
VSASFSQRHNILPEYLMQKEQKQIAEEAADKHDQMAALERQLASPAVEAVPKDGMRALGF
VSGGVEGQVGTGGGGNMIANPEDIELEEDGEDDFDERVEVAQKDVPIAVFGDLAKKVEAD
KSQNNASEDVKEARPLGALERLKKRQKT
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggaggagctgaggagacagtagcaggaggagggcaggagggagaagggcag
aaggagcagcagcgggataagcttctgtaccctgatgacaaagacctgctctacgaggag
gagatccagcggaaccccttcacgctgaagctgtggtggcgctacctcatcgctcacgcc
gagtcccctttccgccgccgctccgtcatctacgagcgtgccctccgcgccctgccgggc
agctacaagctatggcatgcctacttgctggagcggctgaagcaggtgaagcacctcccc
gttacccacccgcgctacgagtccctcaacaacaccttcgaacgagccctcgtcaccatg
cacaagatgcccgtcatctggatcatgtatctcacttccctcacccaacagcagtatgtc
acacgcactcgccacgccttcgaccgcgctctccgctccctccccgtcacccagcacgac
cgcatctgggacaagtatttgacgttcgttggccagaagggcgtccccattgagacctcc
ctccgcgtctaccgccggtacctcaaattcgaccctacccatattgaggacttcatcgac
ttccttcttcgctctggcctctggcaggaggccgccgagcgcctcgccggcgtcctcaac
gatgaaagcttccgttccatccagggcaagacaagacaccagctctggctcgaactctgc
gacctgcttaccaaacacgcctgcgaggtctctgggttgaaggtggatgccatcattcgg
ggtgggatcaggcaattcactgacgaggttggccggctatggacctcgcttgccgactac
tacatccgccgagggatgtacgagaaggccagggatatatacgaagagggcatgcggaca
gtgatcaccgtaagggattttggaatgatctttgactcgtatacccaatacgaagagagt
atgcttgctgcgaagatggagacattggacatcgaagaagaggggggagaacaatttggt
ggtgaaaatggtgctggtgagaaggtggatggagaggatggtggcgctggaggcgatagg
acagacctacgcgggttctggttgtcggacgagaatgacattgacctccgcttggcgagg
ttggagcacctgatggaccggaggccggagattgttagcagcgtccttctgcgccaaaat
cctcacaatgtgcacgagtggcataagcgggtgaagctattcaagaataatccagagcgg
cagatcatgacgttcacagaggcggtgaagacggtggatccgatgaaggctgtgggtaag
cctcacactctctgggttgcttttgccaagctgtacgagaaccacaaggatttggcaaat
gcgagagtggtgtttgagagggccgtgcaggttaactacaaggctcttgatgatcttgca
agcatttggtgcgagtgggcggaaatggagcttagacataagaatttcaaaggggcgtta
ggtcttcttagacgtgcaactgctgagccatctgtcgaggttaagaggagagttgctgct
gatgggaacgagccagtacaaatgaggcttcacaggtctttgaagttgtggacgttttac
cttgatatagaagaaagcttggggaatctggattcaacacgagaagtatatgaaagaata
cttgatctgagaatagcaaccccacaaattataataaactatgcatttcttctagaggag
aataaatattttgaagatgcatttaaggtctatgagagaggtgtcaaaattttcaaatat
ccacatgtgaaagatatttgggtcacctatttatcgaagtttgtgaagagatatggaaag
tcaaaactagaacgagcaagggaattatttgagcaagcggttaggacggctcctgctgaa
gatgtcaagccactttatcttcaatatgcaaaattggaggaggattttggtctagcaaag
agtgcaatgaaagtttacgatcaagcaacaaaggctgtaccagatcatgagaaaatgaaa
atgtacgaaatatacattgcacgtgcagctgaaatatttggtgttcctaagacacggcag
atttatgagcaagcaattgaatcgggacttccagataaagatgtgaagacaatgagcatg
aaatatgctgaccttgagaagagtctaggagagattgatcgtgctcgtggtatatacaat
tttgctgcacagtttgctgatccacgttctgatactgatttctggaacacttggcatgag
tttgaggtgcagcatggtaatgaggatacattccgtgagatgcttcgtgtgaaacgtaca
gtatcagcaagctttagccagagacataatattcttccggagtatttgatgcagaaggag
caaaagcaaattgctgaagaagcagctgacaaacatgaccaaatggcagctctggagagg
cagttagcctctccggccgttgaagcagttcctaaggatggtatgagggcattgggtttt
gtaagtggtggtgtggaaggtcaagttggcactggtggaggaggaaatatgatagcaaat
cctgaagatatcgagttagaagaagatggtgaagatgactttgatgaaagagttgaagtt
gcacaaaaggatgtccctattgctgtttttggggacttggccaaaaaagtcgaggctgat
aaatctcagaataatgcttctgaagatgttaaagaagctagacctcttggcgctcttgag
agactcaagaaaagacaaaagacttag
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