Nymphaea colorata (blue-petal water lily): 116248112
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Entry
116248112 CDS
T07418
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116248112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116248112
Spliceosome [BR:
ncol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116248112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_Vps41
WD_LRWD1
eIF2A
Beta-prop_SCAP
WD40_like
Beta-prop_WDR75_2nd
Nbas_N
Motif
Other DBs
NCBI-GeneID:
116248112
NCBI-ProteinID:
XP_031476580
LinkDB
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Position
2:complement(26523360..26532948)
Genome browser
AA seq
578 aa
AA seq
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MEDDDVPDASRNTTPPPPPPPPPSSTLGSSSASPNPNAPLVLPAAVPPQPLPALHPIPPP
PPPGARPVAPLPIRPPPPPKPRQDAANVDDSGSSDEDEASAAGGASAEFHISEESRRVRE
RHEQAMQELLMKRRSYALAVPTNDSAVRARLRRLGEPVTLFGEREMERRDRLRTIMAKLD
SEGQLEKLMKVHEEEETAALAAAAGEDGREEEEPQSYPFFTEGPRELLDARIEIAKYSLT
RAKARLRRARRKREDPDEDEDAESDYVLKQMNDLTLDCSEIGDDRPLTGCSFSRDSTMLA
TCAWSGIVKLWSVPQVKKIATLKHHTERATDVAFSPLNNLLATASADKTAVLWNSEGSVL
RVFQGHLDRLARVSFHPSGKFLGTASYDKTWRLWDVENGVELLLQEGHSRSVYSICFHTD
GSLVASCGLDALARVWDLRTGRSILALEGHVKPILGIDFSPNGYHLATGGEDNTCRIWDL
RKRKAIYVIPAHTNLVSQVKYERQEGFFLVSSSFDCTAKIWSAKDFKHVKTLSGHEAKVT
CADVAEDGQYIATVAHDRTIKLWTVSKTNGREKSMDID
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacgatgtcccagacgcttctagaaacacgacaccaccaccaccgccgcct
ccaccaccttcctctacgttggggagcagcagtgcgtccccaaacccaaatgctcctctt
gtcctgcccgccgcagtgccgccacagccccttccagctctccaccctatccctcctcct
cctccccctggcgctcgacccgtcgctcctcttcctatccgaccgccgccaccgccaaag
ccccggcaggatgctgccaatgtcgatgattccggttccagcgacgaggacgaggcctct
gccgccgggggtgcgtccgcggagttccatatttcggaggagagtcgccgcgtccgggag
cggcatgagcaggcaatgcaggagctgctgatgaagcggcggagctatgccctcgctgtc
cccaccaacgactcggccgtccgcgcccgcctgcgccgcctcggcgagcctgtcaccctg
ttcggtgagagggagatggagcggagggaccggcttcgcaccatcatggccaagctggac
tccgaggggcagctggagaagctcatgaaggtccacgaggaggaggagactgctgccttg
gcggctgcggctggagaggatgggcgggaggaggaggagccgcagagctaccccttcttc
acggagggaccaagggaactcttagatgcaaggattgagattgcaaagtattctttgacg
agagcgaaggccaggctccgtcgggcaaggaggaagagggaagacccggacgaagacgag
gacgcggagtcggattatgtgttgaaacagatgaatgatttgactcttgattgtagcgag
ataggagatgacaggccgctaacaggttgctcgttctcgcgggattcgacaatgctagct
acctgtgcttggagtggtatagtgaagctatggagtgtgcctcaagtcaaaaaaattgct
acattgaagcatcacaccgagcgtgcaactgatgtggcattttcacctttaaacaatctt
ttggccactgcttctgccgacaaaactgcagtactgtggaacagtgaagggtctgtttta
agggtatttcagggccatctggatcgtcttgcccgtgtctcattccatccttctggaaag
ttcttgggaactgctagttatgacaaaacatggcgactgtgggatgttgaaaatggagtt
gagttacttctccaggaaggacacagcagaagtgtttacagtatttgttttcatactgat
ggttctttagtggcatcatgtggcttagatgcacttgctcgtgtttgggatctccgcaca
ggaagaagcatccttgccttggagggccacgtgaaacctatccttggtattgatttctcc
ccaaatggctatcatttggccactggtggagaagataatacatgccgcatatgggattta
agaaaaagaaaggctatctatgttataccagctcataccaatcttgtttcgcaagtcaaa
tacgaacgtcaagaagggtttttcctggtctcatcttcctttgattgtactgctaagata
tggtcagccaaggatttcaagcatgtcaagacattatctgggcatgaagcgaaagttacc
tgtgcagatgttgcagaagatggacagtatatagcaacggttgcacatgatcggacaatc
aagctgtggacagttagcaaaacaaatggaagggagaaaagtatggatattgactga
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