Nymphaea colorata (blue-petal water lily): 116248467
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Entry
116248467 CDS
T07418
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116248467
09122 Translation
03013 Nucleocytoplasmic transport
116248467
03015 mRNA surveillance pathway
116248467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116248467
03041 Spliceosome [BR:
ncol03041
]
116248467
03009 Ribosome biogenesis [BR:
ncol03009
]
116248467
03012 Translation factors [BR:
ncol03012
]
116248467
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116248467
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116248467
mRNA cycle factors
Stress granule specific factors
116248467
Spliceosome [BR:
ncol03041
]
Complex C
Other components
EJC/TREX
116248467
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
90S particles
Helicases
116248467
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
eIF-4
116248467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
PhoH
Motif
Other DBs
NCBI-GeneID:
116248467
NCBI-ProteinID:
XP_031477125
LinkDB
All DBs
Position
2:complement(25874500..25886798)
Genome browser
AA seq
411 aa
AA seq
DB search
MAAATAPGGSVVPRNRQRGTMDDENLIFETSPGVEAISSFDQMGIRDDLLRGIYAYGFEK
PSAIQQRAVMPIISGRDVIAQAQSGTGKTSMIALAVCQMVDTTSREVQALILSPTRELAS
QTEKVILAIGDYINVQAHACIGGKSLGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRA
IKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATMPNEILEMTSKFMTDPVRVL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSN
NFTVSSMHGDMPQKERDAIMSEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNREL
YIHRIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctacggctccgggtggttcagtggttccaaggaaccgacagagagggacg
atggacgacgagaacctcatcttcgagacgagccccggtgtggaggctatatcgagcttc
gaccagatgggcatccgggacgacctgctccgcggcatctatgcctacggcttcgagaag
ccatccgccatacagcagagggccgtcatgcccatcattagcggacgagacgtcattgcc
caggctcaatccggcaccggcaagacatccatgatcgccctcgccgtctgccaaatggtc
gacaccacctcccgcgaggttcaagctttgattttatcacctacaagagaacttgcatct
cagactgagaaagtgatattagctattggagattacatcaatgtgcaagcacatgcttgt
attggaggtaaaagtcttggggaagacatcagaaagcttgaatatggagttcatgttgta
tctgggacgccaggcagagtttgtgacatgatcaagagaagaacattgcgaaccagggct
attaaattgttgatccttgatgaatctgatgagatgttgagccgcgggtttaaagatcag
atatatgatgtctacagatatctgccacccgagctacaggttgtcttaatatctgcaaca
atgcccaatgaaattctggagatgaccagcaagttcatgactgatccggtccgtgtgctt
gtcaagcgtgatgagttgacattggagggaattaaacaattctttgttgctgttgaacgt
gaagagtggaaattcgatactctttgtgacctatatgatacccttacaatcactcaagct
gtcatattctgcaacacgaagcgaaaggtagattggttaacagaaaagatgcgcagcaac
aatttcactgtgtcctcaatgcatggggacatgcctcaaaaggaaagagatgctataatg
tcagagttcaggtcaggaacaactcgtgttctgattacaacagatgtatgggctcgtgga
cttgatgttcagcaggtctcattggtaattaattatgaccttcccaataatcgagaactt
tacatccatcgtattggtcgctcaggacgatttggccggaagggtgtggccatcaacttc
gttcgcagtgatgacataaggatcttgagagatatagaacaatattacagtacacaaata
gatgaaatgccaatgaatgttgctgatttgatatga
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