Nymphaea colorata (blue-petal water lily): 116249194
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Entry
116249194 CDS
T07418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116249194
03015 mRNA surveillance pathway
116249194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116249194
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116249194
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116249194
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
GDI
Motif
Other DBs
NCBI-GeneID:
116249194
NCBI-ProteinID:
XP_031478241
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All DBs
Position
2:complement(23606254..23626633)
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AA seq
475 aa
AA seq
DB search
MADLDKPAPEPKRSWADEAENVPPSSSETTETVATPPIAEAVDRLSIGGEDKTEETKGLD
LSDDSEIKAVTTGNTIYASASTFEELNLSQELLKGLYSEMNFSKPSRIQAVSLPMILTPP
YRNLIAQAHNGTGKTTCFTLGMLGRVDMKQKVPQAICVCPTRELAIQNEEVLLRLGKYTG
VTSLCAVAGLPRTPITAQVVIGTPGTLKRCITSGQLSTRYMKILVFDEADHMLAEDGFQD
DSLRIMKYIERSTANCQVLLFSATFNENVKDFASKVVKDGNQLFVKKEELSLESIKQYKV
YCPDELAKIELLRDRIFLVAEKLAQTIIFVRTRKSASDLHKTLSDAGWSCTAISGNLEQE
KRDTLIKEFRAGLTKVLICTDILARGFDQSQVNLVVNFDLPVKHYGGPDYEVYLHRVGRA
GRFGRKGAVFNLICTERDKKVMDDIEKYFQHHVAEIPSWQSEEGFEAALKEAGLI
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcttgacaagccggctcccgagccaaagcgctcttgggcggacgaagcggaa
aacgttccaccgtcgtcgtccgagacgacggagacagttgcgacaccgccgatcgccgag
gcagttgatcggctctcgatcggaggagaagacaagacggaggagaccaaagggttggat
ttgtcagatgattccgaaatcaaagctgttaccactggaaatacaatatatgcctctgcg
tcaactttcgaggagttgaatttgtctcaggagctccttaaagggttgtattcagagatg
aactttagtaagccaagcaggatacaggccgttagtcttccaatgatcctaacgccacca
tatcgtaatttgatagcacaagcacataatggtactggaaagaccacatgttttactctt
ggtatgttgggtcgagtggatatgaaacaaaaggtgcctcaagcaatttgtgtctgccca
acaagagaactagcgattcagaatgaagaagtgttgctaaggctgggcaagtatactggt
gtaacttcgttatgtgctgtagctgggctgccacgaactcctatcacagcacaggttgta
attgggactcctggcacactaaagaggtgtatcacatcaggacagttgagtacacgttat
atgaagatacttgtatttgatgaagctgatcacatgttggccgaggatggatttcaagat
gattctttgcggatcatgaagtacattgagagaagcactgcaaattgccaggtgcttttg
ttttctgcaacattcaatgaaaatgtaaaagattttgcttctaaagttgtgaaggatggc
aatcagttgtttgtaaagaaagaagagctttcactcgaatcgattaaacaatataaagta
tactgtccagatgagcttgcaaagattgaactactgagagataggatctttctggtggca
gagaagttggcacaaactataatttttgtgagaacaaggaaaagtgcatctgatctgcat
aagaccctatcagatgctgggtggagctgtacggctatatcaggcaaccttgagcaagag
aagagagacacactcatcaaggaatttagagcagggttaactaaagttctcatatgtact
gatattcttgctcgggggtttgatcaatctcaggttaatttagttgtcaattttgatctc
cccgttaagcattatggcgggcctgactacgaagtatacctgcatagagtagggagagct
gggcgttttggtcgtaaaggagcagtgttcaatttgatatgcactgaaagggataagaag
gtcatggatgatatcgagaagtacttccagcatcatgtagctgagattccctcttggcaa
agtgaagaaggatttgaagctgctctgaaagaagctggtttaatataa
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