Nymphaea colorata (blue-petal water lily): 116249410
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Entry
116249410 CDS
T07418
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030
DNA replication
ncol03410
Base excision repair
ncol03420
Nucleotide excision repair
ncol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116249410
03410 Base excision repair
116249410
03420 Nucleotide excision repair
116249410
03430 Mismatch repair
116249410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncol03032
]
116249410
03036 Chromosome and associated proteins [BR:
ncol03036
]
116249410
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116249410
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116249410
DNA Replication Termination Factors
ELG1-RFC complex
116249410
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116249410
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116249410
Check point factors
HRAD17(Rad24)-RFC complex
116249410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_24
AAA_16
AAA_14
Mg_chelatase
AAA_11
nSTAND3
AAA_5
SLFN-g3_helicase
AAA_2
ResIII
AAA_assoc_2
PhoH
DUF3853
T2SSE
AAA_30
AAA_28
AAA_19
AAA_7
AAA_18
RNA_helicase
DNAX_ATPase_lid
DUF815
NPHP3_N
AAA_25
bpMoxR
ATPase_2
AAA_23
IstB_IS21
TIP49
Parvo_NS1
NB-ARC
DUF4388
Motif
Other DBs
NCBI-GeneID:
116249410
NCBI-ProteinID:
XP_031478470
LinkDB
All DBs
Position
1:6181064..6187543
Genome browser
AA seq
341 aa
AA seq
DB search
MAPVAQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIANQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVSSGSRKGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSQEIMS
SRIQYICQEEGLILDPDALSTLSSISQGDLRRAITYLQGAARLFGSSISSADLISVSGVI
PQDIVRSLYQSCKSGQFELANKEVEYIIAEGYPVSQMLSQLFDLIVEAEDASDEQKAKIC
KRIAEADKRLIDGADEYLQLMDVASNTMRALCNMTQEFSYD
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtagcacagagcactcaaccgtgggtggagaaatataggcccaagcaagtg
aaggatgtcgcccatcaggatgaagttgtcagggttctcacgaacaccctggagaccacc
aattgccctcacatgctcttctatggccctcccgggacggggaagacgacgaccgcactt
gcaatcgccaatcagctatttgggcctgagctgtacaaatcaagagtccttgaactaaat
gcgagtgatgatcgtgggatcaatgtagtgaggaccaaaatcaaggattttgcagcagtt
gcggtaagctctggaagccgcaaaggtggatatccttgcccaccttataagatcattatc
ctagatgaagctgactcaatgacagaagatgcccagaatgccctgaggcggaccatggaa
acttactctaaggttacacggttttttttcatttgcaactatattagcaggatcatagaa
ccacttgcttctagatgtgcaaaatttaggtttaagcccttgtcgcaagaaattatgagc
agtcgtatacagtatatatgccaagaagaaggtcttatcctggatccagatgcactctca
actttaagttccatatctcaaggtgatctacgtcgagctataacatacttgcagggggct
gctcggttgtttggatcatctatttcctctgctgacttgatcagtgtttcaggggttatc
ccacaagacattgtccgatcactttaccagtcttgcaaaagtggtcaatttgaattggca
aataaggaagttgagtacataattgcagaaggttatccagtttcacaaatgctttctcag
ttatttgatttaatagttgaagctgaggatgcatctgatgaacagaaggcaaagatttgt
aagagaattgctgaggcagataagcgtctgattgatggagcagatgaatacttgcagctg
atggatgtggcgagcaacaccatgcgtgctttgtgcaacatgactcaagagttctcgtat
gattag
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