KEGG   Nymphaea colorata (blue-petal water lily): 116249699
Entry
116249699         CDS       T07418                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03020  RNA polymerase
ncol03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116249699
  09124 Replication and repair
   03420 Nucleotide excision repair
    116249699
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncol03021]
    116249699
   03400 DNA repair and recombination proteins [BR:ncol03400]
    116249699
Transcription machinery [BR:ncol03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     116249699
  RNA polymerase III system
   RNA polymerase III
     116249699
  RNA polymerase I system
   RNA polymerase I
     116249699
DNA repair and recombination proteins [BR:ncol03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116249699
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1
Other DBs
NCBI-GeneID: 116249699
NCBI-ProteinID: XP_031478770
LinkDB
Position
3:3149315..3155238
AA seq 207 aa
MAPKFAEDTVTLWRVRRTILQMLRDRHYNVDDSELKMNLNEFADRFGQSVNRDDLIIKAP
KTDDRNDHIFVFFIGEAKVGVKIMRAYAERMRSENVLRGILVVREQLTPSSKQWIHDFNV
KFHMEVFREEELLVNVTEHDLVPEHEVLTSEEKKKLLEHYKVKETQLPRMLITDPVARYF
GMKRGQVAKIIRKSETAGKYVTYRCVV
NT seq 624 nt   +upstreamnt  +downstreamnt
atggcacctaagtttgccgaagacacagtcacgctctggagggtacggcggaccatcctc
cagatgctgcgggatcgccactataacgtagacgactcggagttgaagatgaacctcaac
gaattcgcagacaggttcggccagagcgtcaacagggacgacctcatcattaaagccccc
aaaaccgacgaccgaaatgaccatatattcgtgtttttcattggcgaggctaaggttggg
gtgaagatcatgagggcgtatgctgagcggatgagatcggagaacgtgcttcggggcatt
ctcgtggtgagggagcagctgaccccttcctccaagcagtggatccatgacttcaacgtc
aagttccatatggaggtctttcgagaggaggaactgcttgtcaatgtcactgagcatgac
cttgtccctgagcatgaagtgcttactagtgaagaaaagaaaaaattgcttgagcattat
aaagtgaaagagacacagcttcctcgcatgctaatcaccgatcctgttgcccgatacttt
ggcatgaagcgtggacaagtggccaagataattcgcaagagtgaaactgcagggaagtat
gtcacatatcgctgtgttgtctga

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