Nymphaea colorata (blue-petal water lily): 116249833
Help
Entry
116249833 CDS
T07418
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncol03036
]
116249833
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116249833
microRNA pathway
RISC loading complex
116249833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
DEAD
PAZ
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116249833
NCBI-ProteinID:
XP_031478988
LinkDB
All DBs
Position
3:complement(1071951..1095021)
Genome browser
AA seq
1617 aa
AA seq
DB search
MEEMNGNRLKRCLDEKEEPEAKMAKKEGSWLTSKLKDSDMRSYQLEAYEAALRRNTIVWL
ETGAGKTMIAIMLMKEIARQLRAEGDKRIIIFLAPTVHLVHQQCSVIKTQADLRAEEYYG
AKGMDDWDFRCWQKEACEKEVMVMTPQIFLDSLRNAFITLDMVRLLIFDECHRATGNHPY
TRIMLEYYHKTDHKPKVFGMTASPVIRKGVSSAEDCEYQISELEEILDSKVFTLEDRNDL
EVHVPMAIEIKRYYSSWFVNVDLKGQLDSLWTKFDTTAAAMENPTQKQFLEKSLRAKLSS
FHGKILYCLENLGILCAYEAVKVCMQRDGVALDIEENASPHVLLSNYLKEALQIFKGYLS
AEVCDLLETEAHLDPVYMNFISPKLCELVNSVNALRNQKQVLCMIFVERIITAKVICWLI
KKLKLLSHLSCDYMTGNTSAVNGLTAKRQKMIMDSFREGKVNLLLTTDVAEEGIDVHNCS
CVIRFDLPKSVRSYIQSRGRARYADSLYVLMLERGNEEHKDLLFEIFRSERAMQDATSSR
DKTTVPKLSPKDDAPLYTVSSTGATVTPDSSVSLIFSYCQKLPGDKYFHPKPDFRYELSG
GFSECTLTLPPNAAFRHLKGPPAKSNQHAKKLVCLEACKKLHEMKALDDHLLPLSEQLPV
HTLAKELNSAPGAGTTRRKELHGSATADALSGTWANVLGSITLQAYSLFFSCNIIEENYP
PFIFLMKEELDEDVARSEMDLFLHNNKVVKAHASPCGQVHLDMDQLMKSKSFHELFFNGV
LGKLYHITKSSGVREKILAMDNTAFWPSTNMYMLLPMSQESSQSTESPCIDWKTIDSCFS
VAEFLKANHLPMGLNNFHKEGIQRQDDKKPEKIHLVDGSYGFHDLKDMIVFAIHTGRFYY
VAELVNDATADSPFDGSYDSAKPSYNTYTDYFKKKYGINLHYKTQPLLWLKQCHKAHNLL
SNRGQEDGSLNSNGESDSVSPAKEQQGYVYMPPELLIRLDVSKDILKSFYLLPSLVHRME
SKMLASQLRRAICFRPDGHQIPVDLILEALTTRRCAEDFSLERLELLGDSVLKYVVSCNL
FLKYPRKHEGHLSSLRSSAVCNATLHRLATTRKLQNYIRDAPFDPDRWLAPGERTWRPVP
CKCGVDSREVPLTHPTDVENSAIKIGVACDLGHRWLCSKTVSDCLEALIGAYYVSGGLEA
ACLFMTWVGIDCEHDQALVEEAIRKASEFSSAIEDKNIASLESKLGYKFLNKGLLLEAIT
HASQQEASSGCCYQRLEFLGDSVLDLLITWHLFESHKDIDQGELTDLRSASVNNEKFAQA
AVKHNLQKHLLHGSDLLLTQIRDYVKFLKSFPEDAPLPTYSKTKGPKVLGDLVESIAGAI
LIDSKLNLGEVWRVFKHLLSPFPTPDDLQLHPLRELGEICGEAGCPLGTEFRKEGDQTIA
KLSVQLKDGQLTAEGSDKLKNTALEQAALVLLDQMERKGISHKRSVWRGKSERVQDILPC
SQEQTKGLSPVEGHHSKHSSTRLQDPTVSKVSIDMKRGGPRTSLFQLCKDMSWVRPTFEP
RASGLRFISKVILHLPDSDAVEVEGAEKADKKSSMDSAALALLYKLGELGKCIIEEC
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggaggagatgaacgggaaccgtctcaaaaggtgtttggatgagaaagaggagccggag
gcaaaaatggctaaaaaggagggctcctggctgacgagtaagctaaaggattctgatatg
agaagttaccagctggaggcgtatgaagccgcattacggcgcaatactattgtttggctg
gagacaggggcgggtaagacgatgatagctatcatgctcatgaaggaaatagctcggcag
cttagagctgaaggcgacaaacgtatcataattttcctggcaccaactgtacatcttgtt
caccagcaatgctcggtgattaaaacccaggcggatttgcgggcggaggaatactacggt
gccaaaggcatggatgattgggattttcgttgctggcagaaggaagcatgcgagaaggag
gtaatggttatgactccacaaatctttttggattccttgagaaatgcttttataacactt
gacatggtgagattgttaatatttgatgagtgccaccgagctaccggaaaccatccatat
acaagaataatgttggaatattatcacaagacagatcacaagccaaaagtgttcggaatg
actgcctcccctgtcattaggaaaggtgtatcatcagcggaggattgtgaatatcaaatt
tctgagttggaagaaattctggattctaaggtttttactttggaagacagaaatgatcta
gaagtgcatgtccctatggctatagaaattaaaaggtattacagttcatggtttgtcaat
gtggacctcaaaggacagctggactctttgtggacaaagttcgacacaactgcagcagca
atggagaatccaacacaaaagcagtttctggagaaaagtctgagagctaaactctctagt
tttcacgggaaaattttatactgcctggaaaatctgggcatattatgtgcttatgaggct
gttaaggtgtgtatgcaaagggatggagttgcactggacatcgaagaaaatgcttctcca
catgttcttttgagtaattatttgaaggaggcattacagatttttaaagggtacttatca
gctgaagtctgtgatctactggaaacagaagcccatttggatccagtatatatgaatttc
atttctcctaagctatgtgaacttgtgaactcggtcaacgcacttaggaaccaaaagcaa
gtcctctgcatgatatttgttgagagaattattacagcgaaagtgatctgttggttgata
aaaaaactcaagttattgtcccatctatcttgtgactacatgactggaaatacctctgct
gttaatggactgacagctaagaggcagaaaatgattatggattcttttcgtgaaggaaaa
gtgaacctgttgctgactactgatgtggctgaggaaggcattgatgtgcataattgctcc
tgtgtgatacggtttgacttgccaaaatctgttcgaagctacatacagtcacgtggtcgt
gcaagatatgctgattctctatatgtcctcatgcttgaaaggggtaatgaagagcacaaa
gatttgctatttgaaatttttagaagcgaaagggcaatgcaggatgcaacctcaagtaga
gacaaaacaacggttccaaagttatcccccaaagatgatgcacctctttatacagtttca
tccacaggtgcaacagtaactcctgattcaagtgttagtctcatttttagttattgtcag
aagcttcctggagacaagtatttccatccaaagcctgattttcgttatgaactatctggt
ggtttttctgaatgcaccttgaccttgcctcccaatgctgcatttcgacatctgaagggt
cctcctgccaagagtaaccagcacgcaaagaaacttgtgtgcctagaagcatgcaagaag
ttgcatgaaatgaaagcattagatgatcatttgcttcctctcagtgaacagttgccagtt
catacattggcaaaagaactaaattcagcacccggggcaggcactacaaggaggaaagaa
ctacacgggtcagccactgcagatgctttatctggaacttgggcaaatgtgcttggttct
attactttacaagcttatagtttattcttctcttgtaacatcattgaggagaactatcca
ccattcattttcttaatgaaagaggaattagatgaggatgttgcacgttcagagatggat
ctgtttttacataataacaaagtggtcaaggcacatgcttctccatgtgggcaggtccac
ttggacatggatcagttgatgaagtcaaaaagttttcatgaactgttctttaatggtgtt
cttgggaagttatatcatataacaaaatcttctggagtacgggaaaagatattggcaatg
gacaacacagcattctggccttctacaaatatgtacatgctcttgcccatgtctcaagaa
tcttcacaatccacagaaagcccatgtattgattggaaaactattgatagttgtttctca
gtagctgaatttctgaaggctaaccatttaccaatgggtctgaataatttccacaaggaa
ggaatacaaagacaggatgacaagaaaccagaaaaaattcatttggttgatggttcttat
ggttttcatgaccttaaagatatgatcgtttttgccatccatactggacgattttattac
gtcgctgagttggtgaatgatgcaacagccgatagtccatttgatggatcctacgattca
gcgaaaccaagttataatacctatacagattacttcaagaaaaagtatgggattaacctt
cattacaagacccagcctctgttgtggctaaaacaatgccataaagcacataatcttctt
tcaaatcgaggccaggaagatggttctctcaatagtaatggcgaatcagattctgtcagc
ccagctaaagagcagcaaggctatgtatatatgcctccagaacttttaattagactcgat
gtgtcaaaggacatattgaagtcattttacttattgccttcactagtccacagaatggag
tcaaagatgttggcatctcagcttcgaagagcaatttgttttcgtcccgatggtcatcag
attcctgtagatttgattttagaggctctaacaactagaaggtgtgctgaagatttctcc
ctggagcgcttggaattgcttggggattctgtcttaaaatatgttgtgagctgcaacctt
tttttgaaatatccaagaaaacatgaagggcacttatcttctcttagatcatcagctgta
tgcaatgcaactcttcatagactggccaccactcgcaagttgcagaattatattcgagat
gctccattcgatcctgatcgttggcttgcccctggtgaacgtacctggcgccctgttcct
tgtaaatgtggcgtcgattctcgtgaagttccactgacacatcctaccgatgttgagaat
agtgcaattaaaattggtgttgcttgtgatcttgggcataggtggttgtgctcgaaaaca
gtatcagactgtctggaggcactgataggagcatattatgtgagcggtggtctggaagct
gcatgcttgttcatgacatgggttggtattgattgtgaacatgatcaagctttggttgag
gaagccattaggaaggcatcagaatttagttctgccatagaggataaaaatattgcttct
ttggagtcaaagcttggatacaaattcttgaataaaggtcttttattggaagctatcact
catgcatctcagcaagaagcaagctcgggctgttgctatcagcgacttgagtttcttggt
gattctgtgttggatcttttgatcacgtggcatctctttgaaagccataaagacatcgat
caaggggaattgactgatttacgttcagcatccgtgaacaatgaaaagtttgctcaagct
gcagtcaagcataatcttcagaagcatttactgcatggttccgacttgcttctgacgcag
atcagagactatgtgaaatttttgaagagcttcccagaggatgcgccccttcctacctat
agtaaaacgaaagggccaaaagtgctgggagatttagttgaaagcattgccggtgcaatc
ttaattgacagcaagcttaatcttggagaagtctggagagtgtttaaacatcttctttcc
ccctttccaacacctgacgacctgcaattgcatcctctacgggagttaggagaaatatgt
ggcgaggcaggatgtcctctaggcacagagtttaggaaggagggagaccagaccattgca
aagctttctgtacaactgaaggatggtcagttgactgcagaggggtctgacaaacttaaa
aacactgcattggaacaggctgctctcgttttgttagaccagatggagagaaagggcatt
tcacataaacgaagcgtttggagagggaaatctgaaagggttcaagacattttaccatgt
tcacaagaacaaacaaagggtctatctcccgttgaagggcatcacagtaaacacagctct
accagattacaggatccaactgtctcaaaagtgtccatagatatgaagagggggggacca
agaactagccttttccagctctgcaaagatatgagttgggtcaggcccacctttgaacct
agagcttctggactaaggttcatttcaaaggtgatcttgcatctgcctgattctgatgct
gttgaagtggaaggggcggagaaagccgataaaaagagctcaatggattctgctgcgctt
gctctactatacaaacttggagaactgggtaaatgcatcattgaagaatgttga
DBGET
integrated database retrieval system
