Nymphaea colorata (blue-petal water lily): 116250186
Help
Entry
116250186 CDS
T07418
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116250186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116250186
03036 Chromosome and associated proteins [BR:
ncol03036
]
116250186
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116250186
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116250186
PBAF complex
116250186
GBAF(ncBAF) complex
116250186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
116250186
NCBI-ProteinID:
XP_031479522
LinkDB
All DBs
Position
3:complement(13194808..13215380)
Genome browser
AA seq
548 aa
AA seq
DB search
MATNTSGNASTNQMRQPGAPGSLGNSAMPPPQSMIPTPSTAVNPPTILNSQPAVAPPPHF
QSPFQTQAFVQAQVQVQSAHPQFQPQSHLQMQTQSIVHGQPQVQNLHSSSPTLSTPSSAN
AKRAQQKPPVRPAGTPTSASIAAALKSAELTPAARRKKRKLPEKQLPDRVAALLPESALY
TQLLEFESRVDAALMRKKIDIQESLKNPPSMQKTLRIYIFNTYANQNKAPHERGPGETPS
WSLKIVGRILEDGSEPEPAGGIPKPNHSFPKFSAFFKRITVTLDPTMYPENPTIVWENAR
SPVQHEGFEIKRIGDKEFTAGIRLEMNYVPEKFKLSPALMEVLGIEVDTRPRILAAIWHY
VKARKLQNPADPSFFICDPPLRKVFNEEKMKFTAVSHKISPHLSPPQAIQLEHRIRLSGE
MPVGSVAYDVLVDVPFPLQKEMAAFLANTEKHKEIEACDEAISSAIKRIHEHRKRRAFFL
GFSQSPVEFINALIASQSKDLKLVAGEASRNAEKERRAEFYNQPWVEDAVIRYLNRKPAG
GSDAPGAT
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaatacgagcggcaacgccagcaccaaccagatgcggcagcccggcgctcct
ggctcgctgggcaactcggccatgccgcccccgcagtccatgatcccgacgccttcgacg
gcggtgaacccgccgacgatcctcaattcgcagccggcagtcgcccccccgccccacttc
cagagcccctttcagacgcaggctttcgttcaggctcaggtgcaggtgcagtcggcccac
cctcagttccaaccccagtcccacctgcagatgcagacgcagtccatcgtccacggccaa
cctcaggtccagaatctccattcatcttctcctactctatccacgccgagctcagcgaat
gcaaagagggcccagcaaaagccgcccgtccgccccgctggaacgcccacgagcgccagt
attgctgctgcattgaagtcggcggagctcaccccggccgcccgccggaagaagcgaaag
cttcccgagaagcagttgcctgaccgcgtggctgcgctcttgccggaatctgccctctac
acgcagctcctcgagttcgagagccgtgtagatgcggccttgatgaggaagaaaatcgac
attcaggagtcgctcaagaacccgccttcgatgcagaagacactccgaatatacatcttc
aacacgtacgccaaccagaacaaggctcctcatgagcgcgggcctggggagacgccatcg
tggtcgctaaagatagttgggaggattctggaggatggttctgaaccggagccagcgggt
ggcattccaaagccgaatcattcgttcccgaaattttctgcatttttcaagagaatcaca
gttaccttggacccgactatgtaccctgagaacccaacaattgtgtgggaaaatgctcgc
tcgccggtccagcacgaaggtttcgaaattaagcgaattggggacaaagaattcacagcc
ggtattcgtctcgagatgaattacgtgccagagaagttcaaattgtcaccggcactaatg
gaggttctggggattgaagtcgacacccgtccgagaattctagctgctatatggcactat
gtgaaggccaggaagctgcagaatccagcagatccctctttcttcatctgcgatccaccg
ctccgaaaggtcttcaatgaagagaaaatgaaattcactgcagtatcacataagatatct
cctcatttatctcctcctcaagctatacaattggaacacaggatcaggttgtctggtgaa
atgccagtgggcagcgtagcttacgacgttctggtggacgtccccttccctctgcagaag
gagatggctgcctttctggcgaatacggagaagcataaagagattgaagcgtgtgacgag
gccatttcttctgcaatcaagaggatccatgagcaccggaagaggagggcattctttttg
ggatttagccagtcgcctgtggagtttatcaatgcccttattgcatcgcagagtaaggac
ttgaagctggtcgccggagaagcaagtaggaatgccgaaaaggagcggcgtgcagaattc
tataatcaaccatgggttgaggatgctgtcattcgctatttgaatcgtaagcctgctggt
ggaagtgatgcaccgggagccacatga
DBGET
integrated database retrieval system
